DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)neo38 and AT5G60470

DIOPT Version :9

Sequence 1:NP_001262485.1 Gene:l(3)neo38 / 41423 FlyBaseID:FBgn0265276 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001331895.1 Gene:AT5G60470 / 836168 AraportID:AT5G60470 Length:459 Species:Arabidopsis thaliana


Alignment Length:170 Identity:39/170 - (22%)
Similarity:55/170 - (32%) Gaps:68/170 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   258 TTNASGGTGTASGKKTKKKKPPKEKKPRPKPGEIRETKALDGSTLYCCPECQMAYPDRSLIEQHV 322
            |.|....:..|:..||.|||       |..||.               |:     |:..:|....
plant    27 TPNPYPNSQPAASTKTPKKK-------RNLPGN---------------PD-----PNAEVISLSP 64

  Fly   323 ISHAVERRFVCDICNAALKRKDHLTRHKLSH--------------IPDRPHVC--NICM------ 365
            .|.....||.|:|||...:|:.:|..||..|              :..:.::|  ..|:      
plant    65 KSLMATNRFFCEICNKGFQREQNLQLHKRGHNLPWKLKQKTNKNQVKKKVYICPEKSCVHHDPAR 129

  Fly   366 ---------KSFKRKEQLTLHIVIHSGEKKHVCIECGKGF 396
                     |.|.||.          ||||..|.:|.|.:
plant   130 ALGDLTGIKKHFSRKH----------GEKKWKCDKCSKKY 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)neo38NP_001262485.1 C2H2 Zn finger 305..325 CDD:275368 3/19 (16%)
zf-C2H2_8 306..391 CDD:292531 26/115 (23%)
C2H2 Zn finger 333..353 CDD:275368 8/19 (42%)
zf-H2C2_2 345..370 CDD:290200 8/55 (15%)
C2H2 Zn finger 361..381 CDD:275368 6/36 (17%)
zf-H2C2_2 374..398 CDD:290200 7/23 (30%)
C2H2 Zn finger 389..409 CDD:275368 3/8 (38%)
AT5G60470NP_001331895.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 44 1.000 Inparanoid score I2683
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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