DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)neo38 and IDD2

DIOPT Version :9

Sequence 1:NP_001262485.1 Gene:l(3)neo38 / 41423 FlyBaseID:FBgn0265276 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_190639.1 Gene:IDD2 / 824234 AraportID:AT3G50700 Length:452 Species:Arabidopsis thaliana


Alignment Length:199 Identity:41/199 - (20%)
Similarity:65/199 - (32%) Gaps:77/199 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 NGTVTNGGAGAVSSSGSVGTTNASGGTGTASGKKTKKKKPPKEKKPRPKPGEIRETKALDGSTLY 303
            :.||:...:.::||:|:......|.|                 ||.|..||              
plant     8 SSTVSGEASVSISSTGNQNPLPNSTG-----------------KKKRNLPG-------------- 41

  Fly   304 CCPECQMAYPDRSLIEQHVISHAVERRFVCDICNAALKRKDHLTRHKLSH-------------IP 355
                  |..|:..:|.....:.....||||:|||...:|..:|..|:..|             :.
plant    42 ------MPDPESEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQKSNKEVK 100

  Fly   356 DRPHVCN--ICM---------------KSFKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKDHLR 403
            .:.:||.  .|:               |.|.||.          ||||..|.:|.|.:..:...:
plant   101 KKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKH----------GEKKWKCDKCSKKYAVQSDWK 155

  Fly   404 KHTR 407
            .|::
plant   156 AHSK 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)neo38NP_001262485.1 C2H2 Zn finger 305..325 CDD:275368 3/19 (16%)
zf-C2H2_8 306..391 CDD:292531 26/114 (23%)
C2H2 Zn finger 333..353 CDD:275368 7/19 (37%)
zf-H2C2_2 345..370 CDD:290200 8/54 (15%)
C2H2 Zn finger 361..381 CDD:275368 6/36 (17%)
zf-H2C2_2 374..398 CDD:290200 7/23 (30%)
C2H2 Zn finger 389..409 CDD:275368 4/19 (21%)
IDD2NP_190639.1 C2H2 Zn finger 65..85 CDD:275368 7/19 (37%)
C2H2 Zn finger 106..134 CDD:275368 5/27 (19%)
C2H2 Zn finger 141..160 CDD:275368 4/19 (21%)
C2H2 Zn finger 168..184 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 44 1.000 Inparanoid score I2683
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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