DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)neo38 and AT3G45260

DIOPT Version :9

Sequence 1:NP_001262485.1 Gene:l(3)neo38 / 41423 FlyBaseID:FBgn0265276 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001327332.1 Gene:AT3G45260 / 823664 AraportID:AT3G45260 Length:446 Species:Arabidopsis thaliana


Alignment Length:155 Identity:34/155 - (21%)
Similarity:51/155 - (32%) Gaps:46/155 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 PRPKPGEIRETKALDGSTLYCCPECQMAYPDRSLIEQHVISHAVERRFVCDICNAALKRKDHLTR 348
            |.|.|.......|.....|...|:     ||..:|.....|.....||:|::||...||..:|..
plant    26 PNPNPNPTSSNSAKRKRNLPGNPD-----PDAEVIALSPNSLMTTNRFICEVCNKGFKRDQNLQL 85

  Fly   349 HKLSH--------------IPDRPHVC--NICM---------------KSFKRKEQLTLHIVIHS 382
            |:..|              :..:.::|  ..|:               |.|.||.          
plant    86 HRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKH---------- 140

  Fly   383 GEKKHVCIECGKGFYRKDHLRKHTR 407
            ||||..|.:|.|.:......:.|::
plant   141 GEKKWKCDKCSKKYAVMSDWKAHSK 165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)neo38NP_001262485.1 C2H2 Zn finger 305..325 CDD:275368 4/19 (21%)
zf-C2H2_8 306..391 CDD:292531 26/115 (23%)
C2H2 Zn finger 333..353 CDD:275368 7/19 (37%)
zf-H2C2_2 345..370 CDD:290200 7/55 (13%)
C2H2 Zn finger 361..381 CDD:275368 6/36 (17%)
zf-H2C2_2 374..398 CDD:290200 7/23 (30%)
C2H2 Zn finger 389..409 CDD:275368 4/19 (21%)
AT3G45260NP_001327332.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 44 1.000 Inparanoid score I2683
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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