DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)neo38 and CG32767

DIOPT Version :9

Sequence 1:NP_001262485.1 Gene:l(3)neo38 / 41423 FlyBaseID:FBgn0265276 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001162674.1 Gene:CG32767 / 31430 FlyBaseID:FBgn0052767 Length:1281 Species:Drosophila melanogaster


Alignment Length:627 Identity:124/627 - (19%)
Similarity:193/627 - (30%) Gaps:223/627 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PPAAAANAAA-------AAAAAGTDNHVQRYQTNGNHFNQNVPNVSAANNMQYGQNISIPYSQPQ 89
            ||.|||.|||       ||.||...|:...:.:|.:..|.|     .:|::...|.:.|...|.|
  Fly   119 PPTAAAAAAAVAVAATTAATAAAATNNSASFSSNSSSSNSN-----NSNHLDNQQQLLIQQQQQQ 178

  Fly    90 GDLNFLN-------------AAAAADHKGKIHPKIERDREE---VLNQQILQNVNQSWQTLANTA 138
            ...:.||             ..||:|.|       |.|.||   .||.:.||::.:..|. |...
  Fly   179 QQHHLLNGRRIIIQATGNSSVLAASDIK-------EEDEEEEDPELNDENLQDIEEEAQA-AEAD 235

  Fly   139 NTVDYSSHL-LSATLPISIQHFLKYSETIKKESTGDVLKNG----TNLASLALGGVALTPSNNGA 198
            ...:.::|| ....|.:.....:...|..:.|...:.|::|    ...|:....|.|.:.:..||
  Fly   236 EEPETTAHLSTQVKLELEEDDEMPDEEEEEDEDDDEELQHGQLEYQISAATQTAGAATSSAAGGA 300

  Fly   199 --NGGHHNGLVGMDHGGHMTNMTDANGAALTNGA-----------SNGVNG-NANGTVTNGGAGA 249
              .||....||.:..|..::..|......:|..|           ||.|.| .|..|.....|.|
  Fly   301 ATAGGGSQQLVQLPAGSIVSTTTHRLSVPVTEAALVQLQRRPVYISNAVGGLTAGATYVRMPAAA 365

  Fly   250 VSSSGSVGTTNA---------------SGGTGTASG----------------------------- 270
            |.|...:...|.               ...|..|:.                             
  Fly   366 VISRSPMTVLNVVQQALPATQLILQTQQQQTPAAAAAEQQLALALEQQRQQQEQQAQQQRQQQQQ 430

  Fly   271 ----------KKTKKKKPPKEKKPRPKPGEIRETK----------ALDGS--------------- 300
                      ::.::::..::::.|.:..::::.:          :..||               
  Fly   431 QEQQRQQQQQQQQQQQQQAQQEQQRQQQQQLQQQQQQQQTHPVKHSASGSSSTNNNSTTNSTNSN 495

  Fly   301 -----------TLYCCPECQMAYPDRSLIEQHVISHAVERRFVCDICNAALKR----KDHLTR-- 348
                       |.|.|.||...:..:.|.:.|...||  ....|.|||..||.    :.|..|  
  Fly   496 NNTPAATATVTTSYQCVECVEKFDSKELFDIHRSGHA--NNMKCAICNMVLKSLKNYEKHCLRCK 558

  Fly   349 ---------------------------------------------------HKLSHIPDRPHVCN 362
                                                               ||..|..:....|.
  Fly   559 PYECQICGRVVRFRPNFIKHMRVHTGQQSERHKYKCEVCHKEFMSFEYFKVHKKIHNENVNLTCE 623

  Fly   363 ICMKSFKRKEQLTLHIVIHSGEKKHVCIECGKGFYRKDHLRKHTRSHIA----------RRVKSE 417
            ||.|.|.....|..|..:|||.|.|.|..|||||.::.:|:.|.|:|..          :::.::
  Fly   624 ICGKVFSALASLRGHSKLHSGVKLHKCDVCGKGFGQRYNLKIHARTHTGDFPFECKICKKKLHTQ 688

  Fly   418 VSAQ---------NVNGSAGGGGGGGGGNSAQSNALHGSXGS 450
            .|.|         ....:|......|..:|..||:.:.| .|
  Fly   689 SSLQTHMQVHLRDQPGAAAAAATAAGAASSKASNSSNSSNSS 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)neo38NP_001262485.1 C2H2 Zn finger 305..325 CDD:275368 5/19 (26%)
zf-C2H2_8 306..391 CDD:292531 30/141 (21%)
C2H2 Zn finger 333..353 CDD:275368 10/76 (13%)
zf-H2C2_2 345..370 CDD:290200 10/77 (13%)
C2H2 Zn finger 361..381 CDD:275368 7/19 (37%)
zf-H2C2_2 374..398 CDD:290200 13/23 (57%)
C2H2 Zn finger 389..409 CDD:275368 9/19 (47%)
CG32767NP_001162674.1 C2H2 Zn finger 537..557 CDD:275368 7/19 (37%)
C2H2 Zn finger 562..582 CDD:275368 0/19 (0%)
C2H2 Zn finger 594..614 CDD:275368 2/19 (11%)
C2H2 Zn finger 622..642 CDD:275368 7/19 (37%)
zf-C2H2 648..670 CDD:278523 10/21 (48%)
C2H2 Zn finger 650..670 CDD:275368 9/19 (47%)
zf-H2C2_2 662..684 CDD:290200 4/21 (19%)
C2H2 Zn finger 678..698 CDD:275368 2/19 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 44 1.000 Inparanoid score I2683
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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