DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)neo38 and CG32772

DIOPT Version :9

Sequence 1:NP_001262485.1 Gene:l(3)neo38 / 41423 FlyBaseID:FBgn0265276 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_001284870.1 Gene:CG32772 / 31420 FlyBaseID:FBgn0052772 Length:520 Species:Drosophila melanogaster


Alignment Length:241 Identity:56/241 - (23%)
Similarity:105/241 - (43%) Gaps:33/241 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   226 LTNGASNGVNGNANGTVTNGGAGAVSSSGSVGTTN---ASGGTGTASGKKTKKKKPPKEKKPRPK 287
            |||.::...:..|...|....:.||::|.:...|:   ||.....|..::.:.:.|.:::....:
  Fly    32 LTNNSNFHQSAAAAAAVAASASAAVAASAAAAATSSSTASSSDSDAIAQQQQHQNPQQQQHQNSQ 96

  Fly   288 PGEIRETKALDGSTLY-------------------CCPECQMAYPDRSLIEQHVISHAVERRFVC 333
            ..:.::.:....|:..                   .||.|...:..:|.:..|:.:|:.||:|||
  Fly    97 QQQQQQQQMQSSSSSENLQSQDDSEDVDLIFNEEGSCPLCNKTFSRKSSLMTHIRNHSAERKFVC 161

  Fly   334 DICNAALKRKDHLTRHKLSHIPDRPHVCNICMKSFKRKEQLTLHIVIHSGEKKHVC--IECGKGF 396
            ..|:....:..:|..|:..|..|||:.|..|.|:|.:...|..|..:|:||:..||  .|||:.|
  Fly   162 TYCHKGFTQAANLRNHERIHTNDRPYQCVDCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSF 226

  Fly   397 YRKDHLRKHTRSH---------IARRVKSEVSAQNVNGSAGGGGGG 433
            .:..:|..|.:||         :..:..::|::.|.:..|..|..|
  Fly   227 AQVTNLNNHMKSHHKVQQYCCNVCNKKFTQVTSLNQHLQAHAGVTG 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)neo38NP_001262485.1 C2H2 Zn finger 305..325 CDD:275368 5/19 (26%)
zf-C2H2_8 306..391 CDD:292531 28/86 (33%)
C2H2 Zn finger 333..353 CDD:275368 4/19 (21%)
zf-H2C2_2 345..370 CDD:290200 10/24 (42%)
C2H2 Zn finger 361..381 CDD:275368 6/19 (32%)
zf-H2C2_2 374..398 CDD:290200 11/25 (44%)
C2H2 Zn finger 389..409 CDD:275368 7/21 (33%)
CG32772NP_001284870.1 COG5048 <124..378 CDD:227381 42/149 (28%)
C2H2 Zn finger 133..153 CDD:275368 5/19 (26%)
zf-H2C2_2 145..170 CDD:290200 8/24 (33%)
C2H2 Zn finger 161..181 CDD:275368 4/19 (21%)
zf-H2C2_2 173..198 CDD:290200 10/24 (42%)
C2H2 Zn finger 189..209 CDD:275368 6/19 (32%)
C2H2 Zn finger 217..239 CDD:275368 7/21 (33%)
zf-H2C2_2 231..256 CDD:290200 4/24 (17%)
C2H2 Zn finger 247..267 CDD:275368 2/19 (11%)
C2H2 Zn finger 275..296 CDD:275368
C2H2 Zn finger 304..324 CDD:275368
C2H2 Zn finger 331..351 CDD:275368
C2H2 Zn finger 359..380 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 44 1.000 Inparanoid score I2683
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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