DRSC/TRiP Functional Genomics Resources

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Protein Alignment l(3)neo38 and sptf-3

DIOPT Version :10

Sequence 1:NP_001262485.1 Gene:l(3)neo38 / 41423 FlyBaseID:FBgn0265276 Length:455 Species:Drosophila melanogaster
Sequence 2:NP_493353.3 Gene:sptf-3 / 189783 WormBaseID:WBGene00012735 Length:412 Species:Caenorhabditis elegans


Alignment Length:437 Identity:94/437 - (21%)
Similarity:144/437 - (32%) Gaps:112/437 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 QRYQTNG-----NHFNQNVPNVSAANNMQYGQNISIPYSQP-QGDLNFLNAAAAADHK------- 104
            |:.|..|     :|.....|:.|....:|..|      |.| |..:.|:....|...|       
 Worm    16 QQQQQQGKMMVVHHQRTTTPDGSQVYLLQPSQ------SHPQQRQVQFIPIQVAQGEKKPQTVMM 74

  Fly   105 GKIHPKIERDREEVLNQQILQNVNQSWQTLANTANTVDYSSHLLSATLPISIQHFLKYSETIKKE 169
            .::..:.::.:....|||..|.|.|..|.:........:.....:.|  :..||.:  .|||.:.
 Worm    75 NQMMGQQQQQQPSSSNQQSQQQVQQQQQQVHQVQQVQQHQMQQQNQT--VQQQHLM--METIDQV 135

  Fly   170 STGDV-LKNGTN--------LASLALGGVALTPSNNGANGGHHNGLVGMDHGGHMTNMTDANGAA 225
            .:|.: ..||.|        ........:.:.|:             ||..|..|..........
 Worm   136 GSGIIGNSNGNNQQQQQQQQQQQQRRDPIPIAPA-------------GMVSGQRMQQQQQQPQQQ 187

  Fly   226 LTNGASNGVNGNANGTVTNGGAGAVSSSGSVGTTNASGGTGTASGKKTKKKKPPKEKK------- 283
            ..:.     |.|...:.:|||..|......:|     |......|....::.|...:|       
 Worm   188 QQHN-----NNNTGASTSNGGVNAAPVMPVMG-----GQQRITLGNLHFQQDPNDPQKWIITNEG 242

  Fly   284 --------PRPKPGEIRETKAL-----DG--------------------STLYC-CPECQMAYPD 314
                    |..||.:|:..:.:     ||                    ....| ||.|      
 Worm   243 PPVAGPSAPARKPNQIQHRQMIPQMNEDGMMNMGNDYGDINGQGLGEAPKRCACTCPNC------ 301

  Fly   315 RSLIEQHVISHAVERRFVCDICNAALKRKDHLTRHKLSHIPDRPHVCN--ICMKSFKRKEQLTLH 377
              |.:.:.......|..:|.:||....:..||..|...|..::|..|:  .|.|.|.|.::|..|
 Worm   302 --LQQNNRQGDGKSRIHICHLCNKTYGKTSHLRAHLRGHAGNKPFACDWQHCNKKFTRSDELQRH 364

  Fly   378 IVIHSGEKKHVCIECGKGFYRKDHLRKHTRSHIARRVKSEVSAQNVN 424
            ...|:|||:..|..|||.|.|.|||.||.|:|.:.|:      .|:|
 Worm   365 RRTHTGEKRFACNHCGKKFMRSDHLTKHERTHQSNRI------NNIN 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
l(3)neo38NP_001262485.1 C2H2 Zn finger 305..325 CDD:275368 4/19 (21%)
C2H2 Zn finger 333..353 CDD:275368 6/19 (32%)
COG5048 341..>455 CDD:227381 32/86 (37%)
C2H2 Zn finger 361..381 CDD:275368 7/21 (33%)
C2H2 Zn finger 389..409 CDD:275368 12/19 (63%)
sptf-3NP_493353.3 COG5048 <311..406 CDD:227381 36/101 (36%)
C2H2 Zn finger 318..338 CDD:275368 6/19 (32%)
C2H2 Zn finger 346..368 CDD:275368 7/21 (33%)
zf-H2C2_2 360..383 CDD:463886 10/22 (45%)
C2H2 Zn finger 376..396 CDD:275368 12/19 (63%)

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