DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6923 and AT4G26400

DIOPT Version :9

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:NP_194370.2 Gene:AT4G26400 / 828746 AraportID:AT4G26400 Length:356 Species:Arabidopsis thaliana


Alignment Length:80 Identity:25/80 - (31%)
Similarity:45/80 - (56%) Gaps:4/80 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly  1160 ETIERNTLPHKYRRV-RRPSETDEDAEKCAICLNLFEIENEVRRLPCMHLFHTDCVDQWLVTNKH 1223
            ::|...:||.:...| ..|:....::.:|:|||:.|:..:|.:.:||.|.||..|:..||..:..
plant   213 DSIRHGSLPARKEVVDNLPTVKISESLQCSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSS 277

  Fly  1224 CPICRVDIETHMPND 1238
            ||:||.::.   |:|
plant   278 CPVCRYELP---PDD 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 zf-rbx1 <1185..1228 CDD:289448 16/42 (38%)
zf-RING_2 1187..1228 CDD:290367 16/40 (40%)
AT4G26400NP_194370.2 zinc_ribbon_9 4..35 CDD:405118
RING-H2_RNF181 240..285 CDD:319583 18/44 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1249953at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.