DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6923 and AT3G13430

DIOPT Version :9

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:NP_001030687.1 Gene:AT3G13430 / 820543 AraportID:AT3G13430 Length:315 Species:Arabidopsis thaliana


Alignment Length:223 Identity:52/223 - (23%)
Similarity:92/223 - (41%) Gaps:53/223 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  1080 GNSSVAAQASMRHLQLQPQQQPQAQQSPPVMQHMQRQRA-IHHHMFHHHYSPLHLEIGLAPLSLG 1143
            |:.:...:..:.| ||:..::.:.:.|..::..:|..|| :.....::..:|.:.|:.:...|..
plant    92 GDQNNDGEIDITH-QLEEIRRIRTRHSTAIVNLLQGIRAGLLIESENNEDNPDNSELVVLINSFN 155

  Fly  1144 SRILI---------APS--------RPNRGATLETIERNTLPHKYRRVRRPSETDEDAE------ 1185
            .||.:         .||        .|.....|:.:..|.|.::|   ..|..|.|..|      
plant   156 QRIRVHQDSVDTTSVPSGSLGDYFIGPGFETLLQRLAENDLNNRY---GTPPATKEAVEALAMVK 217

  Fly  1186 ------KCAICLNLFEIENEVRRLPCMHLFHTDCVDQWLVTNKHCPICR------------VDIE 1232
                  :|::||:.|||..|.:.:||.|.||:||:..||..:..||:||            .|.|
plant   218 IEDSLLQCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDDEPKTDAE 282

  Fly  1233 THMPND-------ALPPSSSGVPDAANS 1253
            |...:|       |...|:...||::::
plant   283 TSRNDDNNEDISNASMASNGSSPDSSSN 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 zf-rbx1 <1185..1228 CDD:289448 19/54 (35%)
zf-RING_2 1187..1228 CDD:290367 18/40 (45%)
AT3G13430NP_001030687.1 zinc_ribbon_9 7..40 CDD:405118
RING-H2_RNF126_like 224..266 CDD:319581 18/41 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1249953at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.