DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6923 and Rnf38

DIOPT Version :9

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:XP_011248417.2 Gene:Rnf38 / 73469 MGIID:1920719 Length:623 Species:Mus musculus


Alignment Length:682 Identity:144/682 - (21%)
Similarity:212/682 - (31%) Gaps:231/682 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   696 PGPGNFYPPRCSNMDPQRYFLPINESSMWMPGHP-APPPPPPPMPPILLPDNSSTEAY--LRHQQ 757
            |||....|||                      .| .|||||||.|..:.....|...:  ||...
Mouse    34 PGPAELGPPR----------------------RPRPPPPPPPPRPEPITAGRLSPPGHGPLRSGA 76

  Fly   758 RNLTS---TPSSSSSEQTSTQQSRHR---------RSSP-AN-----------VYHRYHPYYYAI 798
            :.:.:   .|.:.|...:...||.|.         :.|| ||           :..|..     :
Mouse    77 QGVGACGRAPGAGSVGASFQCQSIHHDHICHDDSDKISPGANSAPLPGHPNKVICERVR-----L 136

  Fly   799 TTLPTVVESDYPPSLQPHPHPHPHFQPSQGGS-SRSSLSGALNAAAVAATAAAVQAQTFSDLLSQ 862
            .:|..::.||...::|...|....||.....| .|..||.::.....|:.|.:...:.:.     
Mouse   137 QSLFPLLPSDQNTTIQEDAHFKAFFQSEDSPSPKRQRLSHSVFDYTSASPAPSPPMRPWE----- 196

  Fly   863 AHNEGRAAALEGNRTPPHTMVHAQHQQRQSINPPAPGVASNANLAAAVSPPPPLEMYSGRSTIPH 927
                     :..||.||....:..|...:..|.|    |.|..                      
Mouse   197 ---------MTSNRQPPSVRPNQHHFSGERCNTP----ARNRR---------------------- 226

  Fly   928 CGSPPFSVRRSEAAYSNRQHYQPQPHQGHQAPQNQMHA-----HIHPPHRASAIVATSLTPAPPY 987
              |||...:|......:|.:...|....|..|..|..|     ..|||:     |:..|.....:
Mouse   227 --SPPVRRQRGRRERLSRHNSISQDENYHHLPYAQQQAIEEPRAFHPPN-----VSPRLLHPAAH 284

  Fly   988 PVHQNLWYRQQSMQEMH-RRHMTPTPIDLS------SNAPLLT---------------STLRNGY 1030
            |..||     ..|.::| :.|....|:..:      ...||.|               |.:.:|.
Mouse   285 PPQQN-----AVMVDIHDQLHQGTVPVSYTVTTVAPHGLPLCTGQHIPACSTQQVPGCSVVFSGQ 344

  Fly  1031 LHSICS--------C-------VHARNGPVSSLDP---------AYYPPYDAAPAAAAPPPSPQQ 1071
            ...:||        |       .:|...|:.|.||         .::||:...|....|..:.|.
Mouse   345 HLPVCSVPPPMLQACSVQHLPVPYAAFPPLISSDPFLIHPPHLSPHHPPHLPPPGQFVPFQTQQS 409

  Fly  1072 QSPATSGSGNSSVAAQASMRHLQLQPQQQPQAQQSPPVMQHMQRQRAIHHHMFH----------- 1125
            :||.........:..:    |||:.....|.:.. ||.:......:.:.|...|           
Mouse   410 RSPLQRIENEVELLGE----HLQVGSFTYPPSAH-PPTLPPSAPLQFLTHDPLHQEVSFGVPYPP 469

  Fly  1126 ----------------------HHYSPLHLEIGLAP--------------------------LSL 1142
                                  :|.|.|...:.:.|                          |:|
Mouse   470 FMPRRLTGRSRYRSQQPMPPPPYHPSLLPYVLSMLPVPPAVGPTFSFELDVEDGEVENYEALLNL 534

  Fly  1143 GSRILIAPSRPNRGATLETIERNTLPHKYRRVRRPSETDEDAEKCAICLNLFEIENEVRRLPCMH 1207
            ..|  :..::| ||.|...||:  || .||  ..||....:...|.:|:..||....:|.|||.|
Mouse   535 AER--LGEAKP-RGLTKADIEQ--LP-SYR--FNPSNHQSEQTLCVVCMCDFESRQLLRVLPCNH 591

  Fly  1208 LFHTDCVDQWLVTNKHCPICRVDI-ETHMPND 1238
            .||..|||:||..|:.|||||.|. |.|..::
Mouse   592 EFHAKCVDKWLKGNRTCPICRADASEVHRDSE 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 zf-rbx1 <1185..1228 CDD:289448 20/42 (48%)
zf-RING_2 1187..1228 CDD:290367 20/40 (50%)
Rnf38XP_011248417.2 RING-H2_RNF38_like 568..612 CDD:319386 20/43 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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