DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6923 and rnf130

DIOPT Version :9

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:XP_009289393.1 Gene:rnf130 / 553950 ZFINID:ZDB-GENE-050522-525 Length:428 Species:Danio rerio


Alignment Length:76 Identity:33/76 - (43%)
Similarity:47/76 - (61%) Gaps:10/76 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly  1172 RRVRR-PSETDEDAEKCAICLNLFEIENEVRRLPCMHLFHTDCVDQWLVTNKH--CPICRVDIET 1233
            |.|:| ..||:.|...||:|:..:::.:.||.|||.|:||..|||.||  |:|  ||:|:::|..
Zfish   257 RTVKRGDKETEPDFNHCAVCIEGYQLNDVVRILPCKHVFHKMCVDPWL--NEHCTCPMCKLNILK 319

  Fly  1234 H---MPNDALP 1241
            .   |||  ||
Zfish   320 ALGVMPN--LP 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 zf-rbx1 <1185..1228 CDD:289448 20/44 (45%)
zf-RING_2 1187..1228 CDD:290367 20/42 (48%)
rnf130XP_009289393.1 PA_GRAIL_like 49..188 CDD:239037
zf-RING_2 271..314 CDD:290367 20/44 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D442767at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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