DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6923 and Rnf126

DIOPT Version :9

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:NP_001028874.1 Gene:Rnf126 / 314613 RGDID:1306011 Length:328 Species:Rattus norvegicus


Alignment Length:282 Identity:58/282 - (20%)
Similarity:90/282 - (31%) Gaps:104/282 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly  1069 PQQQSPATSGSGNSSVAAQASMRHLQLQPQQQPQAQQSPPVMQHMQR------------------ 1115
            |::.....:||..|:  |.........:.:|.|.||..|||:|::.:                  
  Rat    41 PEETRNTENGSAPST--APTDQNRQPFEVRQGPWAQARPPVLQNVDQHLFTLPQGYSQFAFGIFD 103

  Fly  1116 ---------------------QRAIHHHMFHHHY------------------------------- 1128
                                 .|....|...|.|                               
  Rat   104 DSFEIPAFPPGAQADDGRDPESRREREHQSRHRYGARQPRARLTARRATGRHEGVPTLEGIIQQL 168

  Fly  1129 -----SPLHL-EIGLAPLSLGSRILIAPSRPNR---GAT-LETI-------ERNTLP-----HKY 1171
                 ||..: .:||.|..      :..|.|..   ||. |:.|       ..||.|     .|.
  Rat   169 VNGIISPAAVPSLGLGPWG------VLHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKI 227

  Fly  1172 RRVRRPSETDE---DAEKCAICLNLFEIENEVRRLPCMHLFHTDCVDQWLVTNKHCPICRVDIET 1233
            :.:.....|:|   ...:|.:|...:.:...||:|||.||||..|:..||..:..||:||..: |
  Rat   228 QALPTVPVTEEHVGSGLECPVCKEDYALGERVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL-T 291

  Fly  1234 HMPNDALPPSSSGVPDAANSAA 1255
            .......||..:||..:::|::
  Rat   292 GQNTATNPPGLTGVGFSSSSSS 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 zf-rbx1 <1185..1228 CDD:289448 16/42 (38%)
zf-RING_2 1187..1228 CDD:290367 16/40 (40%)
Rnf126NP_001028874.1 zinc_ribbon_9 10..40 CDD:291067
zf-RING_2 245..287 CDD:290367 16/41 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1249953at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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