DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6923 and Pja1

DIOPT Version :9

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:NP_001277484.1 Gene:Pja1 / 18744 MGIID:1101765 Length:615 Species:Mus musculus


Alignment Length:627 Identity:122/627 - (19%)
Similarity:199/627 - (31%) Gaps:207/627 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   753 LRHQ-----QRNLT-------STPSSSSSEQTSTQQSRHR----RSSPANV------YHRYHPYY 795
            :.||     ||..|       ||.:.|...::....:|.|    .||.|::      |.||.|..
Mouse    38 MSHQERIASQRRTTAEVPMHRSTANQSKRSRSPFASTRRRWDDSESSGASLAVESEDYSRYPPRE 102

  Fly   796 Y---------AITTLPTVVESDY------PPSLQPHPHPHPHFQPSQGGSSRSSLSGALN----- 840
            |         |...:.|||..|.      |....|.......|:......:|||...::|     
Mouse   103 YRASGSRRGLAYGHIDTVVARDSEEEGAGPVDRLPVRGKAGKFKDDPEKGARSSRFTSVNHDAKE 167

  Fly   841 ---------AAAVAATAAAVQAQTFSDLLSQAHNEGRAAALEGNRTPPHTMVHAQHQQRQSINPP 896
                     ||..:|..|.:..|..|.....:..|||||| :||        ::..::||:: |.
Mouse   168 ECGKVESPPAARCSARRAELSKQNGSSASQISSAEGRAAA-KGN--------NSLERERQNL-PA 222

  Fly   897 APGVASNANLAAAVSPPPPLEMYSGRSTI-----PHCGSP------------PFSVRR-SEAAYS 943
            .|..|..:......:.|...|....|..:     |:|..|            |.|..| .:||.:
Mouse   223 RPSRAPVSICGGGENTPKSAEEPVVRPKVRNVATPNCMKPKVFFDTDDDDDVPHSTSRWRDAADA 287

  Fly   944 NRQHYQPQPHQGHQAPQNQMHAHIHPPHRASAIVATSLTPAPPYPVHQNLWYRQQSMQEMHRRHM 1008
            ...|.:....:|                |..|..::.    |.|...|:....|....::.||..
Mouse   288 EEAHAEGLARRG----------------RGEAASSSE----PRYAEDQDARSEQAKADKVPRRRR 332

  Fly  1009 TPTPIDL--------------SSNAPLLTSTLRNGYLHSICSCVHARNGPVSSLDPAYYPPYDAA 1059
            |....|.              |.:.....:.||..|        .:|..|.||...::       
Mouse   333 TMADPDFWAYTDDYYRYYEEDSDSDKEWMAALRRKY--------RSREQPQSSSGESW------- 382

  Fly  1060 PAAAAPPPSPQQQSPATSGS----GNSSVAAQASMRHLQLQPQQQPQAQQSP-PVMQHMQRQRAI 1119
              ...|.....::..|.:||    |::.......::...||.::|...::.. |.:::.:.:.:.
Mouse   383 --ELLPGKEELERQQAGAGSLASAGSNGSGYPEEVQDPSLQEEEQASLEEGEIPWLRYNENESSS 445

  Fly  1120 H--HHMFHHHYSP--------------------LHLE----------IGLAP------------L 1140
            .  :...|....|                    |.::          :|:|.            :
Mouse   446 EGDNESTHELIQPGMFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAEAISYVDPQFLTYM 510

  Fly  1141 SLGSRILIAPSRPNRGATLETIERNTLPHKYRRVRRPSETDEDAEK------------------C 1187
            :|..|  :|.:.....|.||::..:.      .|..|..:.|..:.                  |
Mouse   511 ALEER--LAQAMETALAHLESLAVDV------EVANPPASKESIDALPEILVTEDHGAVGQEMCC 567

  Fly  1188 AICLNLFEIENEV-RRLPCMHLFHTDCVDQWLVTNKHCPICR 1228
            .||.:.: ::.|| ..|||.|.||..||..||..:..||:||
Mouse   568 PICCSEY-VKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCR 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 zf-rbx1 <1185..1228 CDD:289448 17/61 (28%)
zf-RING_2 1187..1228 CDD:290367 17/41 (41%)
Pja1NP_001277484.1 RING-H2_PJA1_2 566..611 CDD:319379 19/44 (43%)
RING-H2 finger (C3H2C3-type) 567..607 CDD:319379 17/40 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1249953at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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