DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6923 and rnf44

DIOPT Version :9

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:XP_004912927.2 Gene:rnf44 / 100493970 XenbaseID:XB-GENE-1017306 Length:505 Species:Xenopus tropicalis


Alignment Length:561 Identity:122/561 - (21%)
Similarity:174/561 - (31%) Gaps:192/561 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   732 PPPPPPMPPILLPDNSSTEAYLRHQQRNLTSTPSSSSSEQTST----------QQSRHRRSSPAN 786
            |.|.|.:|..|||....:...||         .||:.|..|:.          ::.|.::|..:.
 Frog    75 PLPSPALPSALLPCLCVSVLALR---------SSSACSGATAKRCPPVRRQWGRRDRPQQSVLSQ 130

  Fly   787 VYHRYHPYYYAITTLPTVVESDYPPSLQPHPHPHP----------HFQPSQGGSSRSSLSGALNA 841
            ......|.::.:.....:..:..||.:. ||..|.          |.|..||            .
 Frog   131 DDSNLRPAFFPVDEHRVLALTGAPPRML-HPASHSTQQTPFMVDLHEQVHQG------------P 182

  Fly   842 AAVAATAAAVQAQTFSDLLSQAHNEGRAAALEGNRTPPHTMVHAQHQQRQSINPPAPGVASNANL 906
            ..::.|...|..|.|                     |.||..|......|.:  ||..|..:...
 Frog   183 VPLSYTVTTVTTQGF---------------------PLHTGQHIPGCSAQQL--PACSVMISGQH 224

  Fly   907 AAAVSPPPPLEMYSGRSTIPHCGSPPFSVRRSEAAYSNRQHYQPQPHQGHQAPQNQMHAHIHPPH 971
            ......||||        ||.|......|           .|||.|      |......:|    
 Frog   225 YPLCCLPPPL--------IPGCTMQQLPV-----------SYQPFP------PLLSSEHYI---- 260

  Fly   972 RASAIVATSLTPAPPYPVHQNLWYRQQSMQEMHRRHMTPTPIDLSSNAPLLTSTLRNGYLHSICS 1036
                     |.|.||.|.||                    |..|:|.||.:|             
 Frog   261 ---------LHPQPPLPPHQ--------------------PPHLTSLAPFVT------------- 283

  Fly  1037 CVHARNGPVSSLDP-----------AYYPPYDAAPAAAAPPPSPQQQSPATSGSGNSSVA---AQ 1087
             |..:..|:..:|.           ..:|.:.:.|..|.||..|.......:.....|..   |.
 Frog   284 -VQPQRMPLQRIDNELDVRGDQHHLGNFPFHHSHPMPALPPSMPMHYLSHDALHQELSFPVPYAH 347

  Fly  1088 ASMRHLQLQPQQQPQAQQSPPVMQHMQRQRAIHHHMFHHHYSPLHLE-IGLAPLSLGSRI----- 1146
            ...|.|..|..:..|....||:..           .::..:.|..|. :.::|.|:|..|     
 Frog   348 LMPRRLNAQRYRLQQPLPPPPLPP-----------SYYPSFLPYFLSMLPVSPASVGPAISLDLD 401

  Fly  1147 -----------------LIAPSRPNRGATLETIERNTLPHKYRRVRRPSETDEDAEKCAICLNLF 1194
                             .:..::| ||.|...||:  || .||......::::..  |.:|.:.|
 Frog   402 VDDVEMENYEALLNLAERLGEAKP-RGLTKANIEQ--LP-SYRFNAESHQSEQTL--CVVCFSDF 460

  Fly  1195 EIENEVRRLPCMHLFHTDCVDQWLVTNKHCPICRVDI-ETH 1234
            |....:|.|||.|.||..|||:||.:|:.|||||.|. |.|
 Frog   461 ESRQLLRVLPCNHEFHAKCVDKWLKSNRTCPICRADASEAH 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 zf-rbx1 <1185..1228 CDD:289448 20/42 (48%)
zf-RING_2 1187..1228 CDD:290367 20/40 (50%)
rnf44XP_004912927.2 RING-H2_RNF38_like 450..494 CDD:319386 20/45 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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