DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6923 and rnf6

DIOPT Version :9

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:XP_017209360.1 Gene:rnf6 / 100359398 ZFINID:ZDB-GENE-100209-1 Length:799 Species:Danio rerio


Alignment Length:856 Identity:181/856 - (21%)
Similarity:285/856 - (33%) Gaps:289/856 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   545 SHETRADSVVLTAPDLQLDDW-SSDDDDDDVVFVHSTREPILSIDLTSDDDGLANDTQLQRDRDR 608
            :|.....:||..||  .:..| ..:...::...||.| ..:.::.:..|..|         .||.
Zfish    58 AHVVVVRTVVCVAP--LVPSWLHCNQSAEERELVHIT-AAVSAVSVVMDPPG---------GRDE 110

  Fly   609 GRERERERARDREPY-----------------------------------------RNDTQPNPE 632
             |.|:.||.|..|.|                                         |..:||.||
Zfish   111 -RHRQAERLRREEAYYHFINELSEEEYRLMRDSNLLGTPGEVTAEELRQRLDGAKERVSSQPRPE 174

  Fly   633 ---------------DPNEDRR---TMYDCAYTFPYARRTDRRTEANNEGTSAFAFYSGALADRA 679
                           :|..:..   ::.:...||   |||...|.:...|...:          .
Zfish   175 PRPQSSEAEGSSGVVEPGSETSNGDSLLEWLNTF---RRTGNATRSGQSGNQTW----------R 226

  Fly   680 AISDHN-------YSYELD---QLMDPGPGNFYPPRCSNMDPQRYFLPINESSMWMPGHPAPPPP 734
            |:|..|       :|.|::   :..:||..:..|      ||         :.:.||..|.||||
Zfish   227 AVSRTNPNSGEFRFSLEININHEQPEPGEHSDTP------DP---------TDLPMPPPPPPPPP 276

  Fly   735 PPPMPPI------LLPDNSSTEA--YLRHQQRNLTSTPSSSSSEQTSTQQS-RHRRSSPANVYHR 790
            |||.||:      ..|.|.|..|  .|:|      .||.|:|......:.: |..|||       
Zfish   277 PPPPPPVQSASPPTTPYNPSRAAPYSLQH------PTPYSTSRPTLGRRGAVRRTRSS------- 328

  Fly   791 YHPYYYAITTLPTV--VESDYP--------PSLQPHPHPHP----HFQPSQGGSSRSSLSGALNA 841
                    ||.|.:  :.|..|        |:|...|.|..    ..|.:.||:.||.:....::
Zfish   329 --------TTPPVMPPMTSQAPPMPLRRNLPTLPSSPPPQAPLAFQSQETDGGAVRSQIQVTTSS 385

  Fly   842 AAVAATAAAVQAQTFSDLLSQAHNEGRAAALEGNRTPPHTMVHAQHQQRQSINPPAPGVASNA-- 904
            ..........:.....::..|:..:...||    |.|.::...::.:.|::..  |.|..|.:  
Zfish   386 VNTGVEQNGSEGPDCPNVQPQSDPQVAPAA----REPRNSRTRSRGRVRRAAG--AGGALSRSSR 444

  Fly   905 --------NLAAAVSP-------PPPLE--------MYSGRSTI--------PHC----GSPPFS 934
                    |.|::|||       .||:|        |..|:.|.        |..    |..|.|
Zfish   445 RSRSPLDRNTASSVSPTHSSSSSTPPVESAGSTAVSMEMGQPTAEPTAPTDPPEAGEEEGETPVS 509

  Fly   935 ----VRRSEAAYSNRQHYQPQPHQGHQAPQNQMHAHIHPPHRASAIVATSLTPAPPYPVHQNLWY 995
                |||......:.|..:.:|  |....::.:.:......||:....|.               
Zfish   510 GAGGVRRHPTIMLDLQVRRIRP--GENRDRDSIASRTRSRARAAENTVTF--------------- 557

  Fly   996 RQQSMQEMHRRHMTPTPIDLSSNAPLLT--STLR---------------NGYLHSICSCVHARNG 1043
              :|.....||     .|..|..|.:.|  ||:|               :..|.||...:....|
Zfish   558 --ESDSGGFRR-----TISRSERAGIRTYVSTIRIPLRRISETGLGEPSSMALRSILRQIMTGFG 615

  Fly  1044 PVSSL------DPAYYPPYDAAPAAAAPPPSPQQQSPATSGSGNSSVAA----------QASMRH 1092
            .:|||      .....|..|:||||.|   ...:.:.|..|:.:..|.:          :..:|.
Zfish   616 ELSSLMETEADSETATPSQDSAPAAGA---QTYRAAGAEGGATHGGVESARETLGEGEEEGQVRV 677

  Fly  1093 LQLQPQQQPQAQQSPPVMQH--MQRQRAIHHHMFHHHYSPLHLEIGLAPLSLGSRILIAPSRPNR 1155
            .:..|:.:|.::.:..::::  :...|..|..:.:......|                     .|
Zfish   678 SRTGPEGRPSSRDTNNLVENGTLPILRLAHFFLLNEDEDEEH---------------------PR 721

  Fly  1156 GATLETIERNTLPHKYRRVRRPSETDEDAEKCAICLNLFEIENEVRRLPCMHLFHTDCVDQWLVT 1220
            |.|.|.|: |.:...|.:|....   |....|::|:|.:...|::|||||.|.||..|:|:||..
Zfish   722 GLTKEQID-NLVTRTYGQVNLEG---EQGRACSVCINEYAQGNKLRRLPCAHEFHIHCIDRWLSE 782

  Fly  1221 NKHCPICRVDI 1231
            |..|||||..|
Zfish   783 NNTCPICRQPI 793

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 zf-rbx1 <1185..1228 CDD:289448 20/42 (48%)
zf-RING_2 1187..1228 CDD:290367 20/40 (50%)
rnf6XP_017209360.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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