DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment CG6923 and rnf115

DIOPT Version :9

Sequence 1:	NP_001262484.1	Gene:	CG6923 / 41420	FlyBaseID:	FBgn0037944	Length:	1265	Species:	Drosophila melanogaster
Sequence 2:	NP_001135621.1	Gene:	rnf115 / 100216180	XenbaseID:	XB-GENE-993231	Length:	295	Species:	Xenopus tropicalis

Alignment Length:	199	Identity:	46/199 - (23%)
Similarity:	65/199 - (32%)	Gaps:	77/199 - (38%)

- Green bases have known domain annotations that are detailed below.

  Fly  1125 HHHYSPLHLEIGLA------PLS-LGSRILIAPSRPNRGATLETIERNTL------------PH- 1169
            |....|.|.|:.|.      |:: ..||:   .|||:|...:|.|.:...            ||
Frog    96 HERGHPAHTELRLTRRPPRQPMTRYRSRV---SSRPDRSPAIEGIIQQIFAGVFANPPFPGSPHP 157

  Fly  1170 -----------------------------------------KYRRVRRPSETDEDAE-----KCA 1188
                                                     |.:.|..|:.|....:     :|.
Frog   158 LSWSGMLHSNPGDYAWGQSGLDSIVTQLLGQLENTGPPPADKDKIVSLPTVTVTREQVAMGLECP 222

  Fly  1189 ICLNLFEIENEVRRLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHMPNDALPPS--------SS 1245
            :|...:.||.:||:|||.|.||.||:..||..:..||:||..:.........|.|        ||
Frog   223 VCKEDYAIEEQVRQLPCNHFFHGDCIVPWLELHDTCPVCRKSLNGEDSTRQAPSSEASGSNNFSS 287

  Fly  1246 GVPD 1249
            ..||
Frog   288 DSPD 291

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
CG6923	NP_001262484.1	zf-rbx1	<1185..1228	CDD:289448	18/47 (38%)
CG6923	NP_001262484.1	zf-RING_2	1187..1228	CDD:290367	18/40 (45%)
rnf115	NP_001135621.1	zinc_ribbon_9	11..40	CDD:373030
		RING-H2_RNF115	219..265	CDD:319714	20/45 (44%)
		RING-H2 finger (C3H2C3-type)	221..261	CDD:319714	18/39 (46%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1249953at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010