DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG6923 and rnf150

DIOPT Version :10

Sequence 1:NP_001262484.1 Gene:CG6923 / 41420 FlyBaseID:FBgn0037944 Length:1265 Species:Drosophila melanogaster
Sequence 2:NP_001135553.1 Gene:rnf150 / 100216098 XenbaseID:XB-GENE-5993052 Length:427 Species:Xenopus tropicalis


Alignment Length:75 Identity:29/75 - (38%)
Similarity:46/75 - (61%) Gaps:7/75 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly  1179 ETDEDAEKCAICLNLFEIENEVRRLPCMHLFHTDCVDQWLVTNKHCPICRVDIETHM---PN--- 1237
            ||:.:.:.||:|:..::..:.||.|||.||||..|||.||:.::.||:|:::|...:   ||   
 Frog   260 ETEPEFDNCAVCIEGYKPNDVVRILPCRHLFHKSCVDPWLLDHRTCPMCKMNILKALGIPPNADC 324

  Fly  1238 -DALPPSSSG 1246
             |.:||...|
 Frog   325 LDDIPPDFEG 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6923NP_001262484.1 HRD1 <1155..>1256 CDD:227568 29/75 (39%)
RING-H2_RNF111-like 1185..1230 CDD:438137 20/44 (45%)
rnf150NP_001135553.1 PA_GRAIL_like 45..183 CDD:239037
RING-H2_RNF150 260..314 CDD:438456 23/53 (43%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.