DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer3 and Msgn1

DIOPT Version :9

Sequence 1:NP_524322.1 Gene:Fer3 / 41411 FlyBaseID:FBgn0037937 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001103021.1 Gene:Msgn1 / 689864 RGDID:1587516 Length:187 Species:Rattus norvegicus


Alignment Length:157 Identity:42/157 - (26%)
Similarity:63/157 - (40%) Gaps:41/157 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 WGQEAPPPPIVPYQELIAGFPCTDL----SLWQRSQVTPLVPQRPSTNGRANGSSS--------- 73
            |...|.|      .|||...|...|    ||...|:|........::.|.::|.||         
  Rat    29 WKSRARP------LELIQASPTQSLSPVPSLESYSEVALPCGHSGASTGGSDGYSSHEAGGLVEL 87

  Fly    74 ------------------SSKKTRRRVASMAQRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEK 120
                              ..:|..:...|:.:||.|:.||:.||..|.:|...||..:|. .|.:
  Rat    88 DYSMLAFQPSYIHAAGGLKGQKGSKVKMSVQRRRKASEREKLRMRTLADALHTLRNYLPP-VYSQ 151

  Fly   121 R---LSRIETLRLAITYIGFMAELLSG 144
            |   |::|:||:..|.||..:.:||:|
  Rat   152 RGQPLTKIQTLKYTIKYIRELTDLLNG 178

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer3NP_524322.1 HLH 87..135 CDD:278439 19/50 (38%)
Msgn1NP_001103021.1 HLH 119..173 CDD:278439 21/54 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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