DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer3 and twist2

DIOPT Version :9

Sequence 1:NP_524322.1 Gene:Fer3 / 41411 FlyBaseID:FBgn0037937 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001005956.1 Gene:twist2 / 30395 ZFINID:ZDB-GENE-980526-235 Length:163 Species:Danio rerio


Alignment Length:139 Identity:44/139 - (31%)
Similarity:66/139 - (47%) Gaps:16/139 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 QEAPPPPIVPYQELIAGFPCTDLSLWQRSQVTPLVPQRPSTNGRANGSSSSSKKTRRRVASMA-- 86
            :|:...|:.|...|:     |......|.|......:|.......:.||.||...|.:..|.:  
Zfish     2 EESSSSPVSPVDSLV-----TSEEELDRQQKRFGRKRRQGRKSSEDSSSPSSVNKRNKKPSPSST 61

  Fly    87 --------QRRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSRIETLRLAITYIGFMAELLS 143
                    ||..||:|||:|..:|||||..||:.:||...:| ||:|:||:||..||.|:.::|.
Zfish    62 QSFEELQNQRVLANVRERQRTQSLNEAFASLRKIIPTLPSDK-LSKIQTLKLASRYIDFLCQVLQ 125

  Fly   144 GTPSNSHKS 152
            ....::..|
Zfish   126 SDEMDNKMS 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer3NP_524322.1 HLH 87..135 CDD:278439 25/47 (53%)
twist2NP_001005956.1 HLH 70..120 CDD:278439 27/50 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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