DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer3 and Nhlh2

DIOPT Version :9

Sequence 1:NP_524322.1 Gene:Fer3 / 41411 FlyBaseID:FBgn0037937 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_001099927.1 Gene:Nhlh2 / 295327 RGDID:1308294 Length:135 Species:Rattus norvegicus


Alignment Length:100 Identity:38/100 - (38%)
Similarity:52/100 - (52%) Gaps:12/100 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 VTPLVPQRPSTNGRANGSS-----------SSSKKTRRRVASMAQRRAANIRERRRMFNLNEAFD 107
            |:.|.|.. ..:|...|.|           |..:|.|||.|:...|.|...|||.|:...|.||.
  Rat    35 VSDLEPVE-EVDGDGKGGSRAALYPHPQQLSREEKRRRRRATAKYRSAHATRERIRVEAFNLAFA 98

  Fly   108 KLRRKVPTFAYEKRLSRIETLRLAITYIGFMAELL 142
            :||:.:||...:|:||:||.|||||.||.::..:|
  Rat    99 ELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer3NP_524322.1 HLH 87..135 CDD:278439 23/47 (49%)
Nhlh2NP_001099927.1 bHLH_TS_HEN2 63..135 CDD:381545 31/70 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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