DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fer3 and Ptf1a

DIOPT Version :9

Sequence 1:NP_524322.1 Gene:Fer3 / 41411 FlyBaseID:FBgn0037937 Length:195 Species:Drosophila melanogaster
Sequence 2:NP_446416.1 Gene:Ptf1a / 117034 RGDID:621709 Length:326 Species:Rattus norvegicus


Alignment Length:221 Identity:73/221 - (33%)
Similarity:106/221 - (47%) Gaps:62/221 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PIDQPTYMPDV-------PFQPLWGQEAPPPPIVPYQELIAGFPCTDLSLWQRSQVTPLVPQRPS 63
            |.|..:|..|.       |:.|     ..||..:.|       |||       :.::|....| .
  Rat    92 PEDSGSYCCDAGAPLGAFPYSP-----GSPPSCLAY-------PCT-------AVLSPGTRLR-G 136

  Fly    64 TNGRANGSSSSSKKTRRRVASMAQ----RRAANIRERRRMFNLNEAFDKLRRKVPTFAYEKRLSR 124
            .||.|..::::::: ||||.|.|:    |:|||:||||||.::|:||:.||..:||..||||||:
  Rat   137 LNGAAAAAAAAARR-RRRVRSEAELQQLRQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSK 200

  Fly   125 IETLRLAITYIGFMAELL--------SGT-----PSNSHKSRSDVYGSM-------NGHHQAPPP 169
            ::||||||.||.|::||:        |||     |..|.....|..|:.       :...::|.|
  Rat   201 VDTLRLAIGYINFLSELVQADLPLRGSGTGGCGGPGGSRHLGGDSPGNQAQKVIICHRGTRSPSP 265

  Fly   170 AIHPHHLHPAAAYQRDFASPYNHSLS 195
            :...:.|.|.|          .||||
  Rat   266 SDPDYGLPPLA----------GHSLS 281

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fer3NP_524322.1 HLH 87..135 CDD:278439 29/51 (57%)
Ptf1aNP_446416.1 bHLH_TS_PTF1A 164..218 CDD:381423 33/53 (62%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 229..249 5/19 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 304..326
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4029
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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