DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18476 and PRDM1

DIOPT Version :9

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_011534364.1 Gene:PRDM1 / 639 HGNCID:9346 Length:839 Species:Homo sapiens


Alignment Length:205 Identity:63/205 - (30%)
Similarity:93/205 - (45%) Gaps:12/205 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly   721 KSSVSNPTGDRHTQGTGDLEKDATEDGI-------PLLQCPHCDRTYQMKSRLNNHIRDVHINGD 778
            |....:||....|.||.     ||.:.:       ..:..|..|....:.....|......:...
Human   520 KDKACSPTSGSPTAGTA-----ATAEHVVQPKATSAAMAAPSSDEAMNLIKNKRNMTGYKTLPYP 579

  Fly   779 RKRKEAIKRFLCSLCGMETRSAAALVTHMRRHTGEKPFKCDLCEMAFPRHSELASHRRMHTGEKP 843
            .|::....::.|::|.......:.|..|:|.|:||:||||..|...|.:.:.|..|..:||||||
Human   580 LKKQNGKIKYECNVCAKTFGQLSNLKVHLRVHSGERPFKCQTCNKGFTQLAHLQKHYLVHTGEKP 644

  Fly   844 FHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFVCGTCGER 908
            ..|.||.|.|:.:..||.|:..|||.||::|..|...:.|...||||.:.||.|.|..|..|.:.
Human   645 HECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKVCPAKFTQFVHLKLHKRLHTRERPHKCSQCHKN 709

  Fly   909 FIQSSTLEKH 918
            :|...:|:.|
Human   710 YIHLCSLKVH 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 zf-AD 6..84 CDD:285071
C2H2 Zn finger 206..227 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 401..422 CDD:275368
C2H2 Zn finger 431..447 CDD:275368
C2H2 Zn finger 461..481 CDD:275368
C2H2 Zn finger 490..511 CDD:275368
C2H2 Zn finger 520..540 CDD:275368
C2H2 Zn finger 638..659 CDD:275368
C2H2 Zn finger 668..690 CDD:275368
C2H2 Zn finger 698..715 CDD:275368
C2H2 Zn finger 753..774 CDD:275368 3/20 (15%)
C2H2 Zn finger 790..810 CDD:275368 5/19 (26%)
zf-H2C2_2 802..825 CDD:290200 11/22 (50%)
COG5048 814..>886 CDD:227381 30/71 (42%)
C2H2 Zn finger 818..838 CDD:275368 5/19 (26%)
zf-H2C2_2 830..855 CDD:290200 13/24 (54%)
C2H2 Zn finger 846..866 CDD:275368 8/19 (42%)
zf-H2C2_2 859..883 CDD:290200 10/23 (43%)
C2H2 Zn finger 874..894 CDD:275368 7/19 (37%)
C2H2 Zn finger 902..924 CDD:275368 5/17 (29%)
PRDM1XP_011534364.1 SET 114..220 CDD:214614
COG5048 <584..702 CDD:227381 46/117 (39%)
zf-C2H2 589..611 CDD:278523 5/21 (24%)
C2H2 Zn finger 591..611 CDD:275368 5/19 (26%)
zf-H2C2_2 603..628 CDD:290200 12/24 (50%)
C2H2 Zn finger 619..639 CDD:275368 5/19 (26%)
zf-H2C2_2 631..656 CDD:290200 13/24 (54%)
C2H2 Zn finger 647..667 CDD:275368 8/19 (42%)
zf-H2C2_2 659..684 CDD:290200 10/24 (42%)
C2H2 Zn finger 675..695 CDD:275368 7/19 (37%)
zf-H2C2_2 687..708 CDD:290200 10/20 (50%)
C2H2 Zn finger 703..721 CDD:275368 5/17 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
00.000

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