DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18476 and lmd

DIOPT Version :10

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_732811.1 Gene:lmd / 42717 FlyBaseID:FBgn0039039 Length:866 Species:Drosophila melanogaster


Alignment Length:317 Identity:77/317 - (24%)
Similarity:112/317 - (35%) Gaps:98/317 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   671 CIFKCVS--KSIMDHHRQGQCSSTEKKH-------ACGKCSYKFMW-------------PENLEQ 713
            ||..|.|  :...:.::||...|||..|       ......:|.:|             .:.|:.
  Fly   275 CIPMCASNYEDYANLYQQGSGYSTENYHNNMAQVVEKPNREHKAIWTIDELDELMLGEQQQFLQH 339

  Fly   714 HILLQH---SKSSVSNPTG-DRHTQGTGD------------------LEKDATE----------- 745
            |:..||   .:..:..|.| ::.||...|                  |:.|..|           
  Fly   340 HLQQQHLQEQQEQLHQPHGQEQQTQNCKDDLVNYLSDEFIKAEEFRSLDSDDDENYNEEEDDLDN 404

  Fly   746 --------------------------DGIPLL-QCPHCDRTYQMKSRLNNHIRDVHINGDRKRKE 783
                                      :.|||: :...||..:..:.....||...|:: .||.::
  Fly   405 DVFAPPAESDPKPDSTCCDPEAEPENEVIPLICRWTGCDEEFPHQQAFVEHIEKCHVD-VRKGED 468

  Fly   784 AIKRFLCSLCGMETR-----SAAALVTHMRRHTGEKPFKCDL--CEMAFPRHSELASHRRMHTGE 841
                |.|.......|     :...|:.|||.|:||||.||..  |..||.|...|..|:|.||||
  Fly   469 ----FSCFWLDCPRRYKPFNARYKLLIHMRVHSGEKPNKCPFPGCNKAFSRLENLKIHQRSHTGE 529

  Fly   842 KPFHCTV--CGKDFARSDKLKRHMLTHSGLKPHKCTY--CEKSYRQAKDLKLHLQQH 894
            :|:.|..  |.|.|:.|....:|..||...||:.|..  |.|.|.....|:.|::.|
  Fly   530 RPYGCQYKGCLKAFSNSSDRAKHQRTHYDTKPYACQLPGCTKRYTDPSSLRKHVKNH 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 C2H2 Zn finger 206..227 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 401..422 CDD:275368
C2H2 Zn finger 431..447 CDD:275368
C2H2 Zn finger 461..481 CDD:275368
C2H2 Zn finger 490..511 CDD:275368
C2H2 Zn finger 520..540 CDD:275368
C2H2 Zn finger 638..659 CDD:275368
C2H2 Zn finger 668..690 CDD:275368 6/20 (30%)
C2H2 Zn finger 698..715 CDD:275368 3/29 (10%)
C2H2 Zn finger 753..774 CDD:275368 4/20 (20%)
C2H2 Zn finger 790..810 CDD:275368 6/24 (25%)
COG5048 814..>886 CDD:227381 30/77 (39%)
C2H2 Zn finger 818..838 CDD:275368 8/21 (38%)
C2H2 Zn finger 846..866 CDD:275368 6/21 (29%)
C2H2 Zn finger 874..894 CDD:275368 6/21 (29%)
C2H2 Zn finger 902..924 CDD:275368
lmdNP_732811.1 SFP1 <493..585 CDD:227516 37/91 (41%)
C2H2 Zn finger 504..526 CDD:275368 8/21 (38%)
C2H2 Zn finger 534..556 CDD:275368 6/21 (29%)
C2H2 Zn finger 564..586 CDD:275368 6/21 (29%)
Blue background indicates that the domain is not in the aligned region.

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