DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18476 and sr

DIOPT Version :10

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001262693.1 Gene:sr / 42162 FlyBaseID:FBgn0003499 Length:1271 Species:Drosophila melanogaster


Alignment Length:674 Identity:113/674 - (16%)
Similarity:215/674 - (31%) Gaps:230/674 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 DSSETDSDLDGDHDDQHKRRKKSRKAT-------YSCELCQQKFPRKYQLYDHQRQSHSWSDAPH 429
            ::|.::|:....|..|.:::::...::       :.....||:.|..:..:.|....||      
  Fly   599 NTSSSNSNCHHSHQQQQQQQQQQHMSSPQQQYQQHQILHQQQQLPNHHHHHHHHHHHHS------ 657

  Fly   430 VCGRCDGRFVSLQLLRHHNESQCRNA--------QKRFLCHKCPLRFRWKHNLKTHFREHRITNQ 486
                      .||.|:...:.|.:..        |::.|.|:     :.:.:.:.|:::|.|.:|
  Fly   658 ----------QLQQLQQQQQQQQQQQQHQQQPLHQQQQLQHQ-----QQQQHHQQHYQQHAIQHQ 707

  Fly   487 TFECSECKRVFDKKKSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEHDIPLAE 551
            ..:....|..:....:.|.:.::..|..:.....|       :|....:|       :..:|..:
  Fly   708 QSQQQASKISYRGIFTTTGNAMNAAAAAAAAAAQQ-------QHQQQQQH-------QQQLPSPQ 758

  Fly   552 --TLIAATSRPNGAKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQS---------------Y 599
              .|....|.|                               |.||..|               :
  Fly   759 LGVLAGPMSPP-------------------------------SNSLGNSWGLPSPDKTMFQPPLF 792

  Fly   600 DSPHNYSITNESGFELQLEDSETEDEMQPGVGSRPVYICELCSVQCKRKFEMIQHQRTMHRFDKM 664
            ..|.:|:...:...:.|.:..:.:.:...|....|.......:....:..|::          .:
  Fly   793 SLPAHYATMQQQQQQQQQQQQQQQQQQAAGAAPSPYDDGRAAAAAAAQHAELL----------GL 847

  Fly   665 PHECDDCIFKCVSKS----------IMDHHRQGQCSSTEKKHACGKCSYKFMW------------ 707
            ..:|...:.|....|          :.|.|...:....::::.  :...|:.|            
  Fly   848 TMDCTPLLLKQPPPSYAGASAGFPGLGDLHSSHEQQLQQQQYV--RSQPKYQWLDSPADYAQQQQ 910

  Fly   708 -------PENLEQHILLQHSKSSV-----------------------SNPTGDRHTQGTGDLEKD 742
                   .:..:|.::|....||.                       ||.||  ::.|:|.....
  Fly   911 QVQQVQQQQQQQQTLVLPGPTSSASSSNAALGVLIPKQENYPDMQPSSNGTG--YSGGSGGSSAA 973

  Fly   743 A-------------------TEDG------------IPLLQCPHCDRTYQMKSRLNNHIRDVHIN 776
            |                   |..|            :||...|...|.|.               
  Fly   974 AAAAAAAAAAAVQLAEYSPSTSKGHEILSQVYQQSTVPLKLVPVKPRKYP--------------- 1023

  Fly   777 GDRKRKEAI--KRFLCSL--CGMETRSAAALVTHMRRHTGEKPFKCDLCEMAFPRHSELASHRRM 837
             :|..|..:  :.:.|.:  |......:..|..|:|.|||:|||:|.:|..:|.|...|.:|.|.
  Fly  1024 -NRPSKTPVHERPYACPVENCDRRFSRSDELTRHIRIHTGQKPFQCRICMRSFSRSDHLTTHIRT 1087

  Fly   838 HTGEKPFHCTVCGKDFARSDKLKRHMLTH--SGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPF 900
            |||||||.|.:||:.|||||:.|||...|  ..:|..|....::..:|.:..:...||       
  Fly  1088 HTGEKPFSCDICGRKFARSDEKKRHAKVHLKQRIKKEKVRGEQQQQQQQQQQQQQQQQ------- 1145

  Fly   901 VCGTCGERFIQSSTLEKHRLMRRH 924
                  ::.:|....:.|..:::|
  Fly  1146 ------QQQLQQQQEQHHLSLQQH 1163

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 C2H2 Zn finger 206..227 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 401..422 CDD:275368 4/20 (20%)
C2H2 Zn finger 431..447 CDD:275368 3/15 (20%)
C2H2 Zn finger 461..481 CDD:275368 2/19 (11%)
C2H2 Zn finger 490..511 CDD:275368 2/20 (10%)
C2H2 Zn finger 520..540 CDD:275368 3/19 (16%)
C2H2 Zn finger 638..659 CDD:275368 1/20 (5%)
C2H2 Zn finger 668..690 CDD:275368 5/31 (16%)
C2H2 Zn finger 698..715 CDD:275368 3/35 (9%)
C2H2 Zn finger 753..774 CDD:275368 3/20 (15%)
C2H2 Zn finger 790..810 CDD:275368 5/21 (24%)
COG5048 814..>886 CDD:227381 32/73 (44%)
C2H2 Zn finger 818..838 CDD:275368 7/19 (37%)
C2H2 Zn finger 846..866 CDD:275368 11/19 (58%)
C2H2 Zn finger 874..894 CDD:275368 2/19 (11%)
C2H2 Zn finger 902..924 CDD:275368 2/21 (10%)
srNP_001262693.1 zf-C2H2 1036..1060 CDD:395048 5/23 (22%)
C2H2 Zn finger 1038..1060 CDD:275368 5/21 (24%)
zf-H2C2_2 1052..1077 CDD:463886 12/24 (50%)
C2H2 Zn finger 1068..1088 CDD:275368 7/19 (37%)
zf-H2C2_2 1080..1105 CDD:463886 14/24 (58%)
C2H2 Zn finger 1096..1116 CDD:275368 11/19 (58%)
Blue background indicates that the domain is not in the aligned region.

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