DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18476 and Neu2

DIOPT Version :9

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_649316.1 Gene:Neu2 / 40375 FlyBaseID:FBgn0037085 Length:382 Species:Drosophila melanogaster


Alignment Length:338 Identity:90/338 - (26%)
Similarity:136/338 - (40%) Gaps:84/338 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   599 YDSPHN------YSITNESGFELQLED--SETEDEMQPGVGSRPVYICELCSVQCKRKFEMIQHQ 655
            :|..|.      |.|...:|::::..|  |.|              ||:.|....:..|::|:..
  Fly     5 FDESHEPGLSIAYIIYKCTGWQVEKHDPLSNT--------------ICKSCLEDAQNAFDIIETY 55

  Fly   656 RTMHRFDKMPHECDDCIFKCVSKSIMDHHRQGQCSSTEKKHACGKCSYKFMWPENLEQHILLQHS 720
            ...|:|.:.            .|.:.:...:...|.         ||      |.:|        
  Fly    56 ERSHQFYRF------------LKDVREEESENDGSG---------CS------EEVE-------- 85

  Fly   721 KSSVSNPTGDRHTQ-GTGDL----EKDATEDGI-----PLLQCPHCDRTYQMKSRLNNHIRDVHI 775
                   ..:|..| |..|:    |.|..|..|     |...|.||.:::|:||.|..|:|. | 
  Fly    86 -------AAERDLQDGADDVDSGNEPDINECDIKAKEKPGFSCSHCPKSFQVKSNLKVHMRS-H- 141

  Fly   776 NGDRKRKEAIKRFLCSLCGMETRSAAALVTHMRRHTGEKPFKCDLCEMAFPRHSELASHRRMHTG 840
            .|:|.       |.||||......::.|..|||.||||:||:|..|..:|.....|.:|.:||..
  Fly   142 TGERP-------FTCSLCPKSFGYSSGLQNHMRTHTGERPFQCSHCPRSFTAGHHLKAHIQMHER 199

  Fly   841 EKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFVCGTC 905
            .....|..|.|.|..|..||:|:.||:.....||:.|.||::...:|.:|::.|. |..|.||.|
  Fly   200 RGSLRCPYCQKCFLTSLILKQHLATHTDETQFKCSQCSKSFQVEHELWMHMRVHQ-ERLFTCGHC 263

  Fly   906 GERFIQSSTLEKH 918
            .:.|...:.|::|
  Fly   264 SKDFALHAYLKRH 276

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 zf-AD 6..84 CDD:285071
C2H2 Zn finger 206..227 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 401..422 CDD:275368
C2H2 Zn finger 431..447 CDD:275368
C2H2 Zn finger 461..481 CDD:275368
C2H2 Zn finger 490..511 CDD:275368
C2H2 Zn finger 520..540 CDD:275368
C2H2 Zn finger 638..659 CDD:275368 4/20 (20%)
C2H2 Zn finger 668..690 CDD:275368 1/21 (5%)
C2H2 Zn finger 698..715 CDD:275368 4/16 (25%)
C2H2 Zn finger 753..774 CDD:275368 9/20 (45%)
C2H2 Zn finger 790..810 CDD:275368 8/19 (42%)
zf-H2C2_2 802..825 CDD:290200 12/22 (55%)
COG5048 814..>886 CDD:227381 24/71 (34%)
C2H2 Zn finger 818..838 CDD:275368 5/19 (26%)
zf-H2C2_2 830..855 CDD:290200 8/24 (33%)
C2H2 Zn finger 846..866 CDD:275368 8/19 (42%)
zf-H2C2_2 859..883 CDD:290200 10/23 (43%)
C2H2 Zn finger 874..894 CDD:275368 6/19 (32%)
C2H2 Zn finger 902..924 CDD:275368 6/17 (35%)
Neu2NP_649316.1 zf-AD 1..63 CDD:285071 15/71 (21%)
COG5048 <119..241 CDD:227381 49/130 (38%)
C2H2 Zn finger 121..141 CDD:275368 9/20 (45%)
zf-H2C2_2 133..158 CDD:290200 11/33 (33%)
C2H2 Zn finger 149..169 CDD:275368 8/19 (42%)
zf-H2C2_2 162..185 CDD:290200 12/22 (55%)
C2H2 Zn finger 177..197 CDD:275368 5/19 (26%)
C2H2 Zn finger 205..225 CDD:275368 8/19 (42%)
zf-C2H2_8 206..286 CDD:292531 25/72 (35%)
C2H2 Zn finger 233..253 CDD:275368 6/19 (32%)
C2H2 Zn finger 260..297 CDD:275368 6/17 (35%)
C2H2 Zn finger 303..323 CDD:275368
C2H2 Zn finger 353..373 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 121 1.000 Inparanoid score I1302
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D42822at6656
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.970

Return to query results.
Submit another query.