DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18476 and Zfp54

DIOPT Version :9

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001100937.1 Gene:Zfp54 / 308232 RGDID:1307738 Length:586 Species:Rattus norvegicus


Alignment Length:696 Identity:152/696 - (21%)
Similarity:251/696 - (36%) Gaps:217/696 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   293 QSQYNKIADLRR------HLEEHPDIVS-----LCG---------RPNMEPHELAELFYPDSKDL 337
            |.::..:|..:|      .||.:.::||     :|.         |.:.:.:||.::.:..|.  
  Rat    24 QEEWECLASPQRALYIDVMLENYSNLVSVENYCICDTVCQPVKTERESCQCNELGKMLHDPSH-- 86

  Fly   338 SEEQLINLIRKDLAAGIYQRFYSITNQSGYEMDLDSSETDSDLDGDHDDQHKRRKKSRKATYSCE 402
                          .|:|:|..:....:.|..   ..:.|..:|..:.||||......:...| |
  Rat    87 --------------GGLYKRSDTTETSNNYRC---CKDRDVSVDSSNPDQHKSTHTGEEPCTS-E 133

  Fly   403 LCQQKF------PRKYQLY----DHQRQSHSWSDAPHVCGRCDGRFVSLQLLRHH------NESQ 451
            .|::.|      .:....|    :|:::.|            |..|.|...|...      |..|
  Rat   134 DCEKSFDLCSNITQDQTFYTEEKEHRQEKH------------DDHFSSTYSLMQQSIYIGANAGQ 186

  Fly   452 C-------------------RNAQKRFLCHKCPLRFRWKHNLKTHFREH---RITNQTFECSECK 494
            |                   ....|.:.|:.|...|....:||||.:.|   |...:.::||:|:
  Rat   187 CVKYGKCFSIASSLSIQQRIDTGNKPYKCNICDKSFTQCSSLKTHRKTHQRLRAGTKPYKCSDCE 251

  Fly   495 RVFDKKKSLTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEHDIPLAETLIAATSR 559
            :.|....:|..| ...|..| |...|:.|.:.:.....|.:|.|.|..||               
  Rat   252 KSFSYLSALKSH-QKRHTGE-KRYKCKECDKSYAYRTGLKRHQKIHTAKE--------------- 299

  Fly   560 PNGAKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQSYDSPHNYSITNESGFELQLEDSETED 624
                 |.:|:.|...|.::...::|.                                       
  Rat   300 -----RYSCQHCGKVFHQLSHFKSHF--------------------------------------- 320

  Fly   625 EMQPGVGSRPVYICELCSVQCKRKFEMIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRQGQC 689
                                            |:|..:| |::|::|............|::.. 
  Rat   321 --------------------------------TVHSAEK-PYKCNECHRSFPHYVFFRRHKKNH- 351

  Fly   690 SSTEKKHACGKCSYKFMWPENLEQHILLQHSKSSVSNPTGDRHTQGTGDLEKDATE--------- 745
             |.:|.|.|.:|...|         .:|.|.|:.....||::..:.| :.:|..|:         
  Rat   352 -SLQKSHKCKECGKSF---------FILSHLKTHYRIHTGEKPYKCT-ECDKSFTQYSHLRRHQR 405

  Fly   746 --DGIPLLQCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKRFLCSLCGMETRSAAALVTHMR 808
              .|..|.:|..||:.:.|.|.|:.| :.:|...        |.:.|..|.:.....::|..|.|
  Rat   406 IYTGKKLYRCEVCDKWFTMSSSLSRH-QKIHTEA--------KTYKCKDCDIFFTHYSSLRRHQR 461

  Fly   809 RHTGEKPFKCDLCEMAFPRHSELASHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHK 873
            .||||| ..|..|..:|.|.|.|.:|:|:||||||:.|:.|.|.|.::.:|:.|...|:|.:|:.
  Rat   462 VHTGEK-HTCKQCGKSFTRGSTLRAHQRIHTGEKPYKCSKCDKSFIQASQLRTHQRVHTGERPYV 525

  Fly   874 CTYCEKSYRQAKDLKLHLQQHTGECPFVCGTCGERFIQSSTLEKHR 919
            |..|.||......|:.|.:.||||.|:.|..||:.:||.|.|::|:
  Rat   526 CKECGKSLTTCAILRAHQKIHTGEKPYKCMECGKSYIQYSHLKRHQ 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 zf-AD 6..84 CDD:285071
C2H2 Zn finger 206..227 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 401..422 CDD:275368 5/30 (17%)
C2H2 Zn finger 431..447 CDD:275368 4/15 (27%)
C2H2 Zn finger 461..481 CDD:275368 7/19 (37%)
C2H2 Zn finger 490..511 CDD:275368 6/20 (30%)
C2H2 Zn finger 520..540 CDD:275368 5/19 (26%)
C2H2 Zn finger 638..659 CDD:275368 1/20 (5%)
C2H2 Zn finger 668..690 CDD:275368 3/21 (14%)
C2H2 Zn finger 698..715 CDD:275368 3/16 (19%)
C2H2 Zn finger 753..774 CDD:275368 7/20 (35%)
C2H2 Zn finger 790..810 CDD:275368 5/19 (26%)
zf-H2C2_2 802..825 CDD:290200 10/22 (45%)
COG5048 814..>886 CDD:227381 28/71 (39%)
C2H2 Zn finger 818..838 CDD:275368 8/19 (42%)
zf-H2C2_2 830..855 CDD:290200 13/24 (54%)
C2H2 Zn finger 846..866 CDD:275368 6/19 (32%)
zf-H2C2_2 859..883 CDD:290200 9/23 (39%)
C2H2 Zn finger 874..894 CDD:275368 6/19 (32%)
C2H2 Zn finger 902..924 CDD:275368 8/18 (44%)
Zfp54NP_001100937.1 KRAB 12..52 CDD:396083 6/27 (22%)
C2H2 Zn finger 191..207 CDD:275368 0/15 (0%)
COG5048 210..546 CDD:227381 103/451 (23%)
C2H2 Zn finger 215..235 CDD:275368 7/19 (37%)
C2H2 Zn finger 247..267 CDD:275368 6/20 (30%)
C2H2 Zn finger 275..295 CDD:275368 5/19 (26%)
C2H2 Zn finger 303..323 CDD:275368 5/90 (6%)
C2H2 Zn finger 331..351 CDD:275368 3/19 (16%)
C2H2 Zn finger 359..379 CDD:275368 6/28 (21%)
C2H2 Zn finger 387..407 CDD:275368 3/20 (15%)
C2H2 Zn finger 415..435 CDD:275368 7/20 (35%)
C2H2 Zn finger 443..463 CDD:275368 5/19 (26%)
C2H2 Zn finger 470..490 CDD:275368 8/19 (42%)
C2H2 Zn finger 498..518 CDD:275368 6/19 (32%)
C2H2 Zn finger 526..546 CDD:275368 6/19 (32%)
C2H2 Zn finger 554..574 CDD:275368 8/18 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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