DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18476 and Zfp39

DIOPT Version :9

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001100474.2 Gene:Zfp39 / 303173 RGDID:1306633 Length:717 Species:Rattus norvegicus


Alignment Length:563 Identity:135/563 - (23%)
Similarity:203/563 - (36%) Gaps:176/563 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   396 KATYSCELCQQKFPRKYQLYDHQRQSHSWSDAPHVCGRCDGRFVSLQLLRHHNESQCRNAQKRFL 460
            |.|:.|.:|::.|..|::|..|::                                ....||.|.
  Rat   296 KETFECSICKETFCTKFKLTKHKK--------------------------------IHKGQKYFT 328

  Fly   461 CHKCPLRFRWKHNLKTHF-REHRI-----TNQTFECSECKRVFDKKKSLTVH--------LLSVH 511
            |..|...|     :.|.: ::.||     :::..:|..|   |.:|...:||        |..::
  Rat   329 CRDCEKTF-----INTSYHKDQRIHVGVGSHRYKQCENC---FHQKNQQSVHQSVPKGSKLYEMY 385

  Fly   512 AEES------------------KLIPCQWCSRKFYRHDYLVKHLKRHGLKEHDIPLAETLIAATS 558
            ..|.                  |...|..|.:.|||..:|.:|.:.|               ...
  Rat   386 QSEQSFSEKPNLRCCQKTRAGYKPYRCNMCGKSFYRKSHLSRHQRIH---------------TGE 435

  Fly   559 RPNGAKRITCRMCNLHFERIVDLRAHIQLELKLSLSLHQSYDSPHNYSITNESGFELQLEDSETE 623
            ||.|.|.  |:....|               |.||::||                          
  Rat   436 RPYGCKE--CKKAFFH---------------KSSLTIHQ-------------------------- 457

  Fly   624 DEMQPGVGSRPVYICELCSVQCKRKFEMIQHQRTMHRFDKMPHECDDCIFKCVSKSIMDHHRQGQ 688
               :...|.:| |.|:.|......|.::..|.|| |..:| |:|||:|.....|||.:..||  :
  Rat   458 ---RTHTGEKP-YECKKCRKTFYCKSDLNVHHRT-HTGEK-PYECDECRKTFYSKSHLIIHR--K 514

  Fly   689 CSSTEKKHACGKCSYKFMWPENLEQHILLQHSKSSVSNPTGDRHTQGTGDLEKDATEDGIPLLQC 753
            ..:.:|.:.|.:|...|....||..|                           ..|..|....:|
  Rat   515 IHTGDKPYECQECQKTFNRKSNLTVH---------------------------QKTHTGEKPYEC 552

  Fly   754 PHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKRFLCSLCGMETRSAAALVTHMRRHTGEKPFKC 818
            ..|.:|:..:|.|:.| :.:| :|:       |.:.|..||......::|..|.|.|||::|:.|
  Rat   553 DVCGKTFHRQSHLSMH-QGIH-SGE-------KPYKCKECGKAFYQKSSLSRHQRNHTGDRPYAC 608

  Fly   819 DLCEMAFPRHSELASHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQ 883
            :.|...|...|.|..|:|.|||.||:.|..|.|.|.....|..|..||:|.||::|..|.|::.|
  Rat   609 EECRKTFLHKSSLTVHQRSHTGYKPYSCEECRKTFYSKSHLTVHQRTHTGEKPYECKLCRKAFHQ 673

  Fly   884 AKDLKLHLQQHTGECPFVCGTCGERFIQSSTLEKHRL--MRRH 924
            ...|..|...|..|..|.|..|.:||...|:|..|:.  :|.|
  Rat   674 KSYLSRHQITHEREKRFECQECRKRFYHKSSLTVHQRIHLREH 716

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 zf-AD 6..84 CDD:285071
C2H2 Zn finger 206..227 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 401..422 CDD:275368 6/20 (30%)
C2H2 Zn finger 431..447 CDD:275368 0/15 (0%)
C2H2 Zn finger 461..481 CDD:275368 4/20 (20%)
C2H2 Zn finger 490..511 CDD:275368 7/28 (25%)
C2H2 Zn finger 520..540 CDD:275368 7/19 (37%)
C2H2 Zn finger 638..659 CDD:275368 6/20 (30%)
C2H2 Zn finger 668..690 CDD:275368 8/21 (38%)
C2H2 Zn finger 698..715 CDD:275368 5/16 (31%)
C2H2 Zn finger 753..774 CDD:275368 6/20 (30%)
C2H2 Zn finger 790..810 CDD:275368 6/19 (32%)
zf-H2C2_2 802..825 CDD:290200 9/22 (41%)
COG5048 814..>886 CDD:227381 28/71 (39%)
C2H2 Zn finger 818..838 CDD:275368 7/19 (37%)
zf-H2C2_2 830..855 CDD:290200 12/24 (50%)
C2H2 Zn finger 846..866 CDD:275368 6/19 (32%)
zf-H2C2_2 859..883 CDD:290200 10/23 (43%)
C2H2 Zn finger 874..894 CDD:275368 6/19 (32%)
C2H2 Zn finger 902..924 CDD:275368 8/23 (35%)
Zfp39NP_001100474.2 KRAB 59..118 CDD:214630
KRAB 59..98 CDD:279668
COG5048 296..697 CDD:227381 128/542 (24%)
C2H2 Zn finger 301..321 CDD:275368 6/51 (12%)
C2H2 Zn finger 329..348 CDD:275368 5/23 (22%)
zf-C2H2 410..432 CDD:278523 7/21 (33%)
C2H2 Zn finger 412..432 CDD:275368 7/19 (37%)
C2H2 Zn finger 440..460 CDD:275368 8/65 (12%)
zf-H2C2_2 452..475 CDD:290200 9/52 (17%)
C2H2 Zn finger 468..488 CDD:275368 6/20 (30%)
zf-H2C2_2 480..503 CDD:290200 10/24 (42%)
C2H2 Zn finger 496..516 CDD:275368 8/21 (38%)
C2H2 Zn finger 524..544 CDD:275368 6/46 (13%)
zf-H2C2_2 536..561 CDD:290200 8/51 (16%)
C2H2 Zn finger 552..572 CDD:275368 6/20 (30%)
zf-H2C2_2 564..587 CDD:290200 8/31 (26%)
C2H2 Zn finger 580..600 CDD:275368 6/19 (32%)
C2H2 Zn finger 608..628 CDD:275368 7/19 (37%)
C2H2 Zn finger 636..656 CDD:275368 6/19 (32%)
zf-H2C2_2 648..673 CDD:290200 10/24 (42%)
C2H2 Zn finger 664..684 CDD:275368 6/19 (32%)
C2H2 Zn finger 692..712 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24376
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.