DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18476 and mld

DIOPT Version :10

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_001247289.1 Gene:mld / 2768685 FlyBaseID:FBgn0263490 Length:1965 Species:Drosophila melanogaster


Alignment Length:1231 Identity:216/1231 - (17%)
Similarity:380/1231 - (30%) Gaps:438/1231 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DSTDTDNL--------------------------LKLATPSKKYPDKLLSEILCELTEINLDATG 49
            |.||||.:                          ||:.||       :.|....:|..:| |...
  Fly   779 DDTDTDEVPIVPSGPTPMDFMAEFAKHCANGIEQLKVTTP-------VPSPTPSDLVPLN-DLEA 835

  Fly    50 SQKFP------QCLCSGCTKKLMGAYCYVKQAMAANELLMKHLKNGAAPTSTDCLQEA------- 101
            .||..      :...:|...::...:.|.......:|.|.      .|..:|...||:       
  Fly   836 KQKLEVEMNDVETTLNGILNEMQDQHMYTPNCAHIDEFLT------PADYATLTEQESSVSSPPN 894

  Fly   102 PME--LCAEQHVEVKLETED---------EDCG-ENDVTITCSE-LPEPDE------------TD 141
            |.|  ..||...|....|||         |..| :||  |.|.| :..|:|            .|
  Fly   895 PFEQSSVAEPKDEKPSATEDPFDNSNFTNELIGFQND--IPCFENIETPEEGQNLHLELTQFLRD 957

  Fly   142 MESKKSVDPL-TMIETVKLEMEPRSVEKPA----------------------YDDPTSDFEDEDS 183
            ::..:|..|. ..:|.:::|.:|.:|:...                      ::.|.|..:.:..
  Fly   958 LQPSQSDPPAGEQVEKIEMETQPSTVQMDVQSNLPVQAADTQPQNESANHSPFESPISSPQVQSQ 1022

  Fly   184 LDNLPLYNRIQKWKTGRKSVYKCHDCPRSFKRFDFLKRHEMRVHKPETRLYDCSLCIRKFSRSEA 248
            :: |.:..:|:.....:......|         |.|.....:.|:|:.:.:|.|....:.  ...
  Fly  1023 IE-LQMEPQIETQMQPQIETRMQH---------DVLSVQSPQNHQPQVQSHDQSQMQHQI--PPQ 1075

  Fly   249 LEAHLKIHRNSKRSANI---SEHKKAKAVDL-NLCKPH----------GYK------LIECMICQ 293
            :|..:::....:.:..:   ::|:....|.| :...||          .|:      :::..:.|
  Fly  1076 IEPQIEVQNQEQNTLQLVPQAQHQVVPHVQLQSQLVPHVQTQGTTTTVTYEQIYQQHIVQQTVQQ 1140

  Fly   294 S-------------------------------QYNKIADLR------------------------ 303
            |                               |::.:..|.                        
  Fly  1141 SSNKMQVISLPSAGSETTRQWQTQQSQQQQQVQWSSVGGLEAIKSAPVESVAPTTTTYYISASDL 1205

  Fly   304 ------------------------RHLEEH-PDIVSLCGRPNMEPHELAELFYPDSKDLSEEQLI 343
                                    .|.::| ...:.:..:.:...|:      .......::.::
  Fly  1206 YPQQTETYTMLQPASNESYVIEQVNHQQQHCQQQIQMSQQQHQRQHQ------QQQAQQQQQPIM 1264

  Fly   344 NLIRKDLAAGIYQRFYSITNQSGYEMDLDSSETDSDLDGDHDDQHKRRKKSRKATYSCELCQQKF 408
            .||::   ..|.|...|.:|.....:.:.::.|.:|:   |..||.:|::.|             
  Fly  1265 ILIQQ---PEIQQPVASASNPQQAPLHIYNAATSNDV---HQMQHTQRQQIR------------- 1310

  Fly   409 PRKYQLYDHQR----------QSHSWSDAPHV-----------------------CGRCDG--RF 438
             ::||...:||          |||.....|..                       |..|..  ||
  Fly  1311 -QQYQHQQYQRLQQPQQTRVVQSHPVLGMPGATSISTKVTPIPVTAARGRPLTLKCRFCHNGPRF 1374

  Fly   439 -VSLQLLRHHNESQCRNAQKRFLCHKCPLRFRWKHNLKTHFREHRITNQTFECSECKRVFDKKKS 502
             .||:..||..:  ...|...|.|..||:.|..:.....|...|.:..| ::|.:|..||..:|:
  Fly  1375 SSSLEYSRHIID--LHPAVAPFNCPHCPMAFAGRTKRSQHILSHHVVQQ-YQCGQCSHVFPAQKA 1436

  Fly   503 LTVHLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLKEHDIPLAETLIAATSRPNGAKRIT 567
            |.||:...|                    ..:|......:|..|:.|.   |.:..||.|..   
  Fly  1437 LDVHIQRFH--------------------MTLKTDPSGAVKVEDVQLQ---ITSERRPRGRP--- 1475

  Fly   568 CRMCNLHFERIVDLRAH-IQLELKLSLSLHQSYDSPHNYSITNESGFELQLEDSETEDEMQPGVG 631
                   ::..:.|:.| :|.:.||.:..||.          .:...:...:....:.:.||.:.
  Fly  1476 -------YKPRLQLQQHQLQPQQKLQVQQHQQ----------QQKALQQLPQAQHHQQQQQPQLQ 1523

  Fly   632 SRPVYICELCSVQCKRKFEMIQHQRTMH---------RFDKMPH--------------------E 667
            ...:...:...||.:.: :..|||:.:.         ...:.||                    :
  Fly  1524 QEVLQQVQQLQVQVQPQ-QHQQHQQVLQVQQPQQQPLMQPQSPHPSTVEMQASPTTPRKILCCPD 1587

  Fly   668 CDDCIFKCVSKSIMDH-HRQGQCSSTEKKHA--------CGKCSYKFMWPENLEQHI-------- 715
            |:||        ...| |...|....:...|        ....|.....|....|||        
  Fly  1588 CEDC--------TSGHSHANEQFEELQTLQAPPTVLTPPSTIVSVPSPQPMVYSQHITMPSPEQS 1644

  Fly   716 -------LLQHSKSSV-SNPTGDRH------TQGTGDLEKDATEDGIPLL--------------- 751
                   |.|:.|..| ..|.|..|      :.........:|.|.||..               
  Fly  1645 EPDSTTTLRQYRKRGVIVGPQGPLHLATPVASPSPSSSPSSSTVDHIPPASPATPASPAPPPSPA 1709

  Fly   752 --------------QCPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKR--FLCSLCGMETRSA 800
                          .|.:|:..:..:..|..|.:..|        .|:..  ::|::|....|..
  Fly  1710 VASTVQVSELRTSHHCLYCEERFTNEISLKKHHQLAH--------GALTTMPYVCTICKRGYRMR 1766

  Fly   801 AALVTHMRRHTGE-KPFKCDLCEMAFPRHSELASHR-RMHTGEKPFHCTVCGKDFARSDKLKRHM 863
            .||..||..|..| :|::|::|.:.|||.|:|..|: .:|...||..|..|||.|.....||.|:
  Fly  1767 TALHRHMESHDVEGRPYECNICRVRFPRPSQLTLHKITVHLLSKPHTCDECGKQFGTESALKTHI 1831

  Fly   864 LTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGECPFVCGTCGERFIQSSTLEKHRLMRRH 924
            ..|..| .::|..|::::...|:|:.|.:.|: |..:.|..|...|::.:....|  |:.|
  Fly  1832 KFHGEL-GYQCDGCDRTFEYLKELRKHRRTHS-EMFYKCKFCPSSFMRFTNFRAH--MKTH 1888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 C2H2 Zn finger 206..227 CDD:275368 3/20 (15%)
C2H2 Zn finger 236..256 CDD:275368 2/19 (11%)
C2H2 Zn finger 401..422 CDD:275368 5/30 (17%)
C2H2 Zn finger 431..447 CDD:275368 7/18 (39%)
C2H2 Zn finger 461..481 CDD:275368 5/19 (26%)
C2H2 Zn finger 490..511 CDD:275368 8/20 (40%)
C2H2 Zn finger 520..540 CDD:275368 1/19 (5%)
C2H2 Zn finger 638..659 CDD:275368 5/20 (25%)
C2H2 Zn finger 668..690 CDD:275368 6/22 (27%)
C2H2 Zn finger 698..715 CDD:275368 3/16 (19%)
C2H2 Zn finger 753..774 CDD:275368 4/20 (20%)
C2H2 Zn finger 790..810 CDD:275368 7/19 (37%)
COG5048 814..>886 CDD:227381 24/72 (33%)
C2H2 Zn finger 818..838 CDD:275368 8/20 (40%)
C2H2 Zn finger 846..866 CDD:275368 8/19 (42%)
C2H2 Zn finger 874..894 CDD:275368 5/19 (26%)
C2H2 Zn finger 902..924 CDD:275368 5/21 (24%)
mldNP_001247289.1 zf-AD 186..255 CDD:214871
PAT1 <959..>1109 CDD:401645 21/161 (13%)
C2H2 Zn finger 1365..1388 CDD:275368 8/24 (33%)
C2H2 Zn finger 1396..1416 CDD:275368 5/19 (26%)
C2H2 Zn finger 1424..1445 CDD:275368 8/20 (40%)
C2H2 Zn finger 1725..1746 CDD:275368 4/20 (20%)
C2H2 Zn finger 1756..1776 CDD:275368 7/19 (37%)
C2H2 Zn finger 1785..1806 CDD:275368 8/20 (40%)
zf-C2H2 1812..1834 CDD:395048 8/21 (38%)
C2H2 Zn finger 1814..1834 CDD:275368 8/19 (42%)
zf-C2H2 1839..1861 CDD:395048 5/21 (24%)
C2H2 Zn finger 1841..1861 CDD:275368 5/19 (26%)
zf-C2H2 1866..1888 CDD:395048 5/23 (22%)
C2H2 Zn finger 1868..1888 CDD:275368 5/21 (24%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.