DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18476 and lin-13

DIOPT Version :10

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:NP_498678.3 Gene:lin-13 / 176083 WormBaseID:WBGene00003002 Length:2248 Species:Caenorhabditis elegans


Alignment Length:1107 Identity:211/1107 - (19%)
Similarity:348/1107 - (31%) Gaps:374/1107 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 KLPVI-CRTCDSTDTDNLLKLATPSKKYPDKLLSEILCELTEINLDATGSQK-----FPQC---L 57
            |.||: |.:|:.|:.|                       |.|:...|:|...     .|:|   |
 Worm   782 KDPVVHCLSCEVTEDD-----------------------LIEVYHAASGPHAGVRCIDPECKAHL 823

  Fly    58 CSGCTKKLMGAYCYVKQAMAANELLMKHLKNGAAPTSTDCLQEAPMELCAEQHVEVKLETEDEDC 122
            ||..:.|...:..:.|||..  ||:...|.|     .::...:..:.|.|:...:::.:......
 Worm   824 CSVISLKTHLSDVHSKQATL--ELVSGELDN-----FSENRFDRSLMLMAKHFTQLQFDERTYLA 881

  Fly   123 GENDVTITCSELPEPDETDMESKKSVDPLTMIETVKLEMEPRSVEKPAYDDPTSDFEDEDSLDNL 187
            ...|:     |...|....:|:|....|:      .:..:|:.: ||||.....|....:.|  :
 Worm   882 RFTDI-----ECFMPFSGLLEAKDQPRPM------PIRQQPQQI-KPAYSLVRPDIIAPNEL--M 932

  Fly   188 PLY---------NRIQKWKTGRKS-VYKCHDCPRSFKRFDFLKRHEMRVHKPETRLYDCSLCIRK 242
            ..|         .||:.:|..|.| .|.|..|.|.::..:....|..|.|     .:.|..|.:.
 Worm   933 RPYTLTPAIRPGQRIKPYKVPRTSRWYSCSWCDREYESLNQFVDHLTRFH-----THPCPSCGKA 992

  Fly   243 FSRSEALEAHL--KIHRNSK-RSANI-------SEHKKAKAVDLNLCKPHGYKLIECMICQSQ-- 295
            ||.......|:  ::....| |.|.:       .|..:.:.:.:::...| :..||.::...:  
 Worm   993 FSSQNTRRTHVCSRLFAEIKGRGATLCGQCPSCPEIHQVERIFVHMLNRH-FSTIEYVLATGELL 1056

  Fly   296 -----------------YNKIADLRRHLEE------HPDI----VSLCGRP--NMEPHELA---- 327
                             |.:..:..|.:|:      .||.    |.:...|  .:|.:.|.    
 Worm  1057 PPARDVGIRYNHGENGGYGRSYESLRAIEQSVVDPRSPDYRLKQVKISALPIHGVELNRLPARDP 1121

  Fly   328 -----ELFYPDSKDLSEEQLINLIRKDLAAGIYQRFYSITNQSGYEMDLDS-SETDSDLDGDHDD 386
                 .:..|..|::....:..:.                     |:..|| .|....:| ||.:
 Worm  1122 PMGSFTVCPPKDKNIDPRLMCYMC---------------------ELTFDSYDELTHHMD-DHPE 1164

  Fly   387 QHKRRKKSRKATYSCELCQQKFPRKYQLYDHQRQSHSWSDAPHVCGRC-----DGRFVSLQLLRH 446
            :..          :|..|....|..:.|..|..|.|....:...|  |     ..||:|..:|  
 Worm  1165 KWA----------NCPFCAANTPTHFDLQKHLIQEHVVQISGQAC--CAFCQEHHRFMSSHIL-- 1215

  Fly   447 HNESQCRNAQKRFLC---HKCPLRFRWKHNLKTHF-REHRITNQTFECSECKRVF---------- 497
               .:|:...:..:|   ...||..|      .|. |.|.:|.:.|:|:.|.:||          
 Worm  1216 ---FRCKRVSRCTICGVKSNDPLANR------VHIQRSHALTLRRFQCAYCIKVFVSVGEYYEHE 1271

  Fly   498 -----DKKKSLTV--------------HLLSVHAEESKLIPCQWCSRKFYRHDYLVKHLKRHGLK 543
                 .:..|.|.              |..|||...:|   ||.||......|.:|||.|.|  .
 Worm  1272 CASGGGRVYSCTCSPNKFFNSPIEFCDHFDSVHILRNK---CQLCSYDAPSQDGMVKHRKTH--M 1331

  Fly   544 EHDIPLAETL-------------------------IAATSRPNGAKRITCRMCNLHFERIVDLRA 583
            ....|..:|.                         :.|:.:.....::...|||:.         
 Worm  1332 RSGCPKEQTKKLFILMKCLFPKHNSGYMRFIEGGPVPASYQDVDRSQMNYLMCNMG--------- 1387

  Fly   584 HIQLELKLSLSLHQSY-DSPHNY--------SITNESGFE-----------------LQLEDSET 622
                  .:|.|.|:|| .:|...        |.:...|.:                 :.|.|.|.
 Worm  1388 ------TVSPSCHKSYAQAPRTLLEALEGVASDSRSGGLQKVVNVTTRMNEPSSSDVIMLSDDED 1446

  Fly   623 ED------EMQPGV--GSRPVYICELCSVQCKRKFEMIQ----------------HQRTMHRFDK 663
            :|      .:..||  ||.........|:.|:.:.|..|                ....:.:..|
 Worm  1447 DDCVVFEKAVPNGVAQGSSTSTPNPESSINCEVRVETSQAGYGGAQQPGYVDEDDTDLEVAQGGK 1511

  Fly   664 MPHECDDCIFKCVSKSIMDHHRQGQC-------SST-----------EKKHACGKCSYKFMWPEN 710
            .|:.      :.|.|.::|.:...:.       :||           |||..|.|||..|....:
 Worm  1512 SPYG------EPVVKEVVDENGDDELAVVAEVENSTGTLPSSISAGREKKFKCQKCSLAFYTNGS 1570

  Fly   711 LEQHILLQHSKSSVSNPTGDRHTQGTGDLEKDATED-GIPLLQ-----CPHCDRTYQMKSRLNNH 769
            ||.|:              ..|.|..|  .:..||. |||::.     |.:|...::.:.:...|
 Worm  1571 LESHM--------------RDHRQDAG--AQLCTETYGIPVVTKASWLCRNCCVVFENQPKYQKH 1619

  Fly   770 IRDVHINGDRKRKEAIKRFLCSLCGMETRSAAALVTHMRRHTGEK-PFKCDLCEMAFPRHSELAS 833
            :.   |:||       ....|..|.....:..|:..||:.|..:| .:.|..|...|.....|..
 Worm  1620 MA---IHGD-------TCLTCIHCSGIAFNHTAIQNHMKSHEEKKVRYSCGTCLCTFASDLALFD 1674

  Fly   834 HRRMHTGEKPFH-CTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYRQAKDLKLHLQQHTGE 897
            |..:..|...:: |.|||.....:|.:.:|:..|:|   |..:               |.|..|.
 Worm  1675 HLSVAHGVSLYYFCKVCGFGSTSADSVFQHISIHNG---HNYS---------------LVQRFGA 1721

  Fly   898 CP 899
            ||
 Worm  1722 CP 1723

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 C2H2 Zn finger 206..227 CDD:275368 5/20 (25%)
C2H2 Zn finger 236..256 CDD:275368 5/21 (24%)
C2H2 Zn finger 401..422 CDD:275368 6/20 (30%)
C2H2 Zn finger 431..447 CDD:275368 6/20 (30%)
C2H2 Zn finger 461..481 CDD:275368 6/23 (26%)
C2H2 Zn finger 490..511 CDD:275368 8/49 (16%)
C2H2 Zn finger 520..540 CDD:275368 9/19 (47%)
C2H2 Zn finger 638..659 CDD:275368 4/36 (11%)
C2H2 Zn finger 668..690 CDD:275368 3/28 (11%)
C2H2 Zn finger 698..715 CDD:275368 7/16 (44%)
C2H2 Zn finger 753..774 CDD:275368 3/20 (15%)
C2H2 Zn finger 790..810 CDD:275368 5/19 (26%)
COG5048 814..>886 CDD:227381 16/73 (22%)
C2H2 Zn finger 818..838 CDD:275368 5/19 (26%)
C2H2 Zn finger 846..866 CDD:275368 6/19 (32%)
C2H2 Zn finger 874..894 CDD:275368 1/19 (5%)
C2H2 Zn finger 902..924 CDD:275368
lin-13NP_498678.3 C2H2 Zn finger 961..982 CDD:275371 5/20 (25%)
C2H2 Zn finger 986..1006 CDD:275371 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.