DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18476 and gfi1b

DIOPT Version :10

Sequence 1:NP_731615.1 Gene:CG18476 / 41404 FlyBaseID:FBgn0037931 Length:936 Species:Drosophila melanogaster
Sequence 2:XP_002936223.1 Gene:gfi1b / 100489910 XenbaseID:XB-GENE-944426 Length:343 Species:Xenopus tropicalis


Alignment Length:167 Identity:58/167 - (34%)
Similarity:90/167 - (53%) Gaps:8/167 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   753 CPHCDRTYQMKSRLNNHIRDVHINGDRKRKEAIKRFLCSLCGMETRSAAALVTHMRRHTGEKPFK 817
            |..|.:.:.....|..|:|..| :|.|.       |:|::||.....|.:|..|:..|:.|:.|:
 Frog   178 CVKCSKVFSTSHGLEVHVRRSH-SGTRP-------FVCNICGKSFGHAVSLEQHLNVHSQERSFE 234

  Fly   818 CDLCEMAFPRHSELASHRRMHTGEKPFHCTVCGKDFARSDKLKRHMLTHSGLKPHKCTYCEKSYR 882
            |.:|...|.|.|.|::|..:|:..:|:.|..|||.|.:...:|:|...|:|.|||||..|.|::.
 Frog   235 CKMCGKTFKRSSTLSTHLLIHSDTRPYPCQFCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFS 299

  Fly   883 QAKDLKLHLQQHTGECPFVCGTCGERFIQSSTLEKHR 919
            |:.:|..|.::|||..||.|..||:.|.:...|.:||
 Frog   300 QSSNLITHSRKHTGFKPFSCDLCGKGFQRKVDLRRHR 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18476NP_731615.1 C2H2 Zn finger 206..227 CDD:275368
C2H2 Zn finger 236..256 CDD:275368
C2H2 Zn finger 401..422 CDD:275368
C2H2 Zn finger 431..447 CDD:275368
C2H2 Zn finger 461..481 CDD:275368
C2H2 Zn finger 490..511 CDD:275368
C2H2 Zn finger 520..540 CDD:275368
C2H2 Zn finger 638..659 CDD:275368
C2H2 Zn finger 668..690 CDD:275368
C2H2 Zn finger 698..715 CDD:275368
C2H2 Zn finger 753..774 CDD:275368 5/20 (25%)
C2H2 Zn finger 790..810 CDD:275368 6/19 (32%)
COG5048 814..>886 CDD:227381 27/71 (38%)
C2H2 Zn finger 818..838 CDD:275368 7/19 (37%)
C2H2 Zn finger 846..866 CDD:275368 7/19 (37%)
C2H2 Zn finger 874..894 CDD:275368 6/19 (32%)
C2H2 Zn finger 902..924 CDD:275368 7/18 (39%)
gfi1bXP_002936223.1 COG5048 <76..337 CDD:227381 58/167 (35%)
C2H2 Zn finger 178..199 CDD:275368 5/20 (25%)
PHA00733 <204..252 CDD:177301 16/54 (30%)
C2H2 Zn finger 207..227 CDD:275368 6/19 (32%)
C2H2 Zn finger 235..255 CDD:275368 7/19 (37%)
C2H2 Zn finger 263..283 CDD:275368 7/19 (37%)
zf-H2C2_2 275..300 CDD:463886 11/24 (46%)
C2H2 Zn finger 291..311 CDD:275368 6/19 (32%)
C2H2 Zn finger 319..336 CDD:275368 5/16 (31%)
Blue background indicates that the domain is not in the aligned region.

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