DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42327 and ptpn-22

DIOPT Version :9

Sequence 1:NP_001036706.2 Gene:CG42327 / 41401 FlyBaseID:FBgn0259227 Length:1429 Species:Drosophila melanogaster
Sequence 2:NP_500128.2 Gene:ptpn-22 / 176981 WormBaseID:WBGene00021507 Length:469 Species:Caenorhabditis elegans


Alignment Length:360 Identity:95/360 - (26%)
Similarity:159/360 - (44%) Gaps:84/360 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  1083 NAAFDDPSLRHNLLTASE-------LARFVERRSD-----VFEEFRD----VPQIIARADEVPPG 1131
            |.|.|  .|....|...|       |.||.:.|.:     :..|:|.    .||..||       
 Worm    74 NPAMD--GLLREFLKEEEAYTPQDYLRRFYQIRVEQEKLRMEAEYRSECAVAPQHYAR------- 129

  Fly  1132 CEDKNRYANVIPLPETRVVLQRQGDDDKTE-YINANYVRGPRDAPNYYIACQAPLESTTSDFWRM 1195
                |||.:::|..:.||.:|:  |.:..| |:||:.::.| .....:||.||||.:|..::|:|
 Worm   130 ----NRYRDILPYDKNRVEIQK--DSENPEGYMNASLIQLP-GGKTEFIAAQAPLPATLDEWWKM 187

  Fly  1196 IWEQQSRVIIQATDLSENGIERCAEYLPPSATLDNHSSYGDYQVTLKHREV--KDRYAISTLVLK 1258
            |.|.:..:::....|.|....:|..|.|..  :.....:|||::||:..::  .|.|.:..|.::
 Worm   188 IDEHRVSLVVILCKLVELNKIKCERYWPEQ--VGESELFGDYEITLEEEKLFDDDEYLMRCLKME 250

  Fly  1259 RVDGEESRELTHYWYK-WPEAGVPAEEAPIIAMLLEARSSLKSYSLEQANELREKSATLETSMDA 1322
            .....|.|::....|: ||:.|.|:.|..::.|:                :|.|           
 Worm   251 NQTTGECRKVHQLHYREWPDHGCPSGEKQLLNMI----------------DLME----------- 288

  Fly  1323 DGSKAEAGSTSSHEINGNISSRSGTRSQQGPLTVHCSPGTGRTGTIIASDMAIRSLETPK-RSVD 1386
                         .|:..:|.:..:     |:.||||.|.||||||||.:.....::... .|:|
 Worm   289 -------------NIHEEVSPQDSS-----PILVHCSAGVGRTGTIIAINFIREQMKAETLHSID 335

  Fly  1387 IPQLVYYVRRGRASAVQTKEQYEFIYKVASMYAAK 1421
            |..||..:|:.|||.|||::|::|:::..:.|..:
 Worm   336 IFGLVMTLRKQRASMVQTQDQFQFVHRCIASYCRR 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42327NP_001036706.2 PTPc 1134..1415 CDD:238006 78/285 (27%)
Y_phosphatase 1134..1415 CDD:278528 78/285 (27%)
ptpn-22NP_500128.2 PTPc 102..365 CDD:214550 85/323 (26%)
PTPc 129..365 CDD:238006 79/296 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0789
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.