DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG42327 and ptpn6

DIOPT Version :9

Sequence 1:NP_001036706.2 Gene:CG42327 / 41401 FlyBaseID:FBgn0259227 Length:1429 Species:Drosophila melanogaster
Sequence 2:NP_001116928.1 Gene:ptpn6 / 100144699 XenbaseID:XB-GENE-487863 Length:589 Species:Xenopus tropicalis


Alignment Length:479 Identity:122/479 - (25%)
Similarity:202/479 - (42%) Gaps:112/479 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   976 STQSPSEMPPTFMAPYP----NELDHMQTNAQDNGTDVNVIIAITVSVIGVVALILLVAFLYLMR 1036
            |..:|.:...:.:.|..    :::.|::.|.:.|....|         ||......|...:...:
 Frog   138 SRSNPGDFVISILTPEQKDGVHKVTHVKINTEKNKDTYN---------IGREKFESLTDLIEWHK 193

  Fly  1037 KRQKQTSYGQR------CRPVSLDAYSLDNVSVLGSVRRKGRDMRASKRTYGNAAFDDPSLRHNL 1095
            |:..:.:.|..      |....::|..::|       |.|..:.::.:.....|.|.:       
 Frog   194 KKPIEEATGSHLFLKKPCYSTRVNAADIEN-------RMKELNKKSEQDEAAKAGFWE------- 244

  Fly  1096 LTASELARFVERRSDVFEEFRDVPQIIARADEVPPGCEDKNRYANVIPLPETRVVLQRQGDDDK- 1159
                |.....::.:.|..:         |.:...|..:.||||.|::|...|||:| :.||::. 
 Frog   245 ----EFDALQKQENKVHND---------RKEGQRPENKSKNRYKNILPYDHTRVIL-KCGDNNTP 295

  Fly  1160 -TEYINANYVR----GPRDAPNYYIACQAPLESTTSDFWRMIWEQQSRVIIQATDLSENGIERCA 1219
             ::|||||||.    ...:.|..:||||..|.|||.|||.|:|::.||||:..|...|.|..:|.
 Frog   296 GSDYINANYVNNLLWAEGEPPKRFIACQGCLNSTTGDFWEMVWQENSRVIVMTTKEIEKGRTKCV 360

  Fly  1220 EYLPPSATLDNHSSYGDYQVTL-KHREVKDRYAISTLVLKRVDG-EESRELTHYWY-KWPEAGVP 1281
            .|.|...|  |...:|.:.|.| ..|:.|: |.:..|.:...:. |:||::.||.| .||:.|||
 Frog   361 PYWPDVGT--NMKEFGRFLVQLMSERDTKE-YKVRLLRVSLTESTEKSRDIHHYQYLTWPDHGVP 422

  Fly  1282 AEEAPIIAMLLEARSSLKSYSLEQANELREKSATLETSMDADGSKAEAGSTSSHEINGNISSRSG 1346
            |:...:::.            ||:.|.::|                                   
 Frog   423 ADPGGVLSF------------LEEVNSMQE----------------------------------- 440

  Fly  1347 TRSQQGPLTVHCSPGTGRTGTIIASDMAIRSLETP--KRSVDIPQLVYYVRRGRASAVQTKEQYE 1409
            :..:.|.:.||||.|.||||||||.||.:..::..  ...:|:.:.:..||..|:..|||:.||:
 Frog   441 SMPRAGAIVVHCSAGIGRTGTIIAIDMLLDLIQMKGVDSDIDVQKTIQMVRNQRSGMVQTEAQYK 505

  Fly  1410 FIYKVASMY----AAKITNLSNDN 1429
            |||...:.:    ..|:..:.|.|
 Frog   506 FIYSAIAQFIDSTKHKLKAMENRN 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG42327NP_001036706.2 PTPc 1134..1415 CDD:238006 96/291 (33%)
Y_phosphatase 1134..1415 CDD:278528 96/291 (33%)
ptpn6NP_001116928.1 SH2_N-SH2_SHP_like 3..101 CDD:198203
SH2_C-SH2_SHP_like 109..213 CDD:198185 13/83 (16%)
PTPc 241..513 CDD:214550 101/342 (30%)
PTPc 271..513 CDD:238006 96/292 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.