DRSC/TRiP Functional Genomics Resources

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Protein Alignment Csk and LSB1

DIOPT Version :10

Sequence 1:NP_731611.2 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:NP_011652.1 Gene:LSB1 / 853037 SGDID:S000003368 Length:241 Species:Saccharomyces cerevisiae


Alignment Length:169 Identity:40/169 - (23%)
Similarity:56/169 - (33%) Gaps:50/169 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   398 NAVLGAGSSGTAPGSAVGAVLLHQQQLSQSQPHIVPPSIPPHHHHHRENNVHPIQAGAAAALHLS 462
            |.|..|.:...:|.||..|     ...:.|:|.:.|||..|....:....|....|..|..:   
Yeast   105 NYVKPAFTRSASPKSAEAA-----SSSTVSRPSVPPPSYEPAASQYPSQQVSAPYAPPAGYM--- 161

  Fly   463 SHALNSHNLISSASNHSPKSPSQTQQQQQT------TNQQQQQQQQQASHSILSTFAPAPTVAAV 521
                              ::|...|||...      ||..||.|||         :||....|.|
Yeast   162 ------------------QAPPPQQQQAPLPYPPPFTNYYQQPQQQ---------YAPPSQQAPV 199

  Fly   522 QPAGSQSVAGTAAAVAAVAQQQQQQHLQLLANCPPGGAG 560
            :....|| :|.::|..:...:        |.|....|||
Yeast   200 EAQPQQS-SGASSAFKSFGSK--------LGNAAIFGAG 229

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_731611.2 SH2_csk_like 680..777 CDD:198190
PTKc_Csk_like 793..1047 CDD:270635
LSB1NP_011652.1 SH3 55..108 CDD:214620 1/2 (50%)
PRK12323 <100..>156 CDD:481241 14/55 (25%)
Blue background indicates that the domain is not in the aligned region.

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