DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and PERK12

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:NP_173768.2 Gene:PERK12 / 838963 AraportID:AT1G23540 Length:720 Species:Arabidopsis thaliana


Alignment Length:697 Identity:159/697 - (22%)
Similarity:254/697 - (36%) Gaps:193/697 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   382 PPTAPLRHNKRP-----APQPNAVLGAGSSGTAPGSAVGAVLLHQQQLSQ-------SQ----PH 430
            ||..|..::..|     .|.|    .|.||.|.|             ||:       ||    |.
plant    22 PPETPSENSALPPVDSSPPSP----PADSSSTPP-------------LSEPSTPPPDSQLPPLPS 69

  Fly   431 IVPP---SIPPHHHHHRENNVHPIQAGAAAALHLSSHALNSHNLISSASNHSPKSPSQTQ----- 487
            |:||   |.||     ..::..|:.:..:..              ...||.||..|..::     
plant    70 ILPPLTDSPPP-----PSDSSPPVDSTPSPP--------------PPTSNESPSPPEDSETPPAP 115

  Fly   488 -QQQQTTNQQQQQQQQQASHSILSTFAPAPTVAAVQPAGSQSVAGTAAAVAAVAQQQQQQHLQLL 551
             .:....|....|..|....|     :|:|.|....|. |..:....|..|:..           
plant   116 PNESNDNNPPPSQDLQSPPPS-----SPSPNVGPTNPE-SPPLQSPPAPPASDP----------- 163

  Fly   552 ANCPPGGAGLMSSSLNAAQMGMHGAERALPPKSLALSGSQHGSNMLLHTAPQ-----PPQASQPA 611
            .|.||      :|.|:...           |..:..||.........:..|.     ||:.....
plant   164 TNSPP------ASPLDPTN-----------PPPIQPSGPATSPPANPNAPPSPFPTVPPKTPSSG 211

  Fly   612 AVVGVS-GSGSAGMSTSLHSFDINGVTAGSGVNASSAWSSGSTTAMNHASLSPTALAPQQGRSRC 675
            .||..| .|.|.|..|....   ||...|.|    ..:...:...|..|..:..||.......|.
plant   212 PVVSPSLTSPSKGTPTPNQG---NGDGGGGG----GGYQGKTMVGMAVAGFAIMALIGVVFLVRR 269

  Fly   676 EVKLNAMPWFHGSITRDEAEHLLQP----REDGLFLVRESTNFPGD----------YTLCVCFQS 726
            :.|.|...:.|       :::|..|    :.|| ||..:.   ||.          |......||
plant   270 KKKRNIDSYNH-------SQYLPHPNFSVKSDG-FLYGQD---PGKGYSSGPNGSMYNNSQQQQS 323

  Fly   727 KVEHYRVKYLENKLTIDDEEYFENLGQLVAHYEADADGLCTQLIKCLPKLGKQEFCINSKDFVDK 791
            .:.:                .:...|....|::..:.|.....|.   ..|:..|.......:.:
plant   324 SMGN----------------SYGTAGGGYPHHQMQSSGTPDSAIL---GSGQTHFSYEELAEITQ 369

  Fly   792 GWVIPEAELQLRESI-GKGEFGDVMLGILRNEK-VAVKMLKDEGAVQ---KFLAEASVMTTLEHD 851
            |:.        |::| |:|.||.|..|.|::.| ||||.|| .|:.|   :|.||..:::.:.|.
plant   370 GFA--------RKNILGEGGFGCVYKGTLQDGKVVAVKQLK-AGSGQGDREFKAEVEIISRVHHR 425

  Fly   852 NLVKFIGLVFTSKHLYLVTEYMSKGSLVDYLRSRGRQHITKKDQIIFAYDTASGMEYLEA---KK 913
            :||..:|...:.:|..|:.||:|..:|..:|..:|...:....::..|..:|.|:.||..   .|
plant   426 HLVSLVGYCISDQHRLLIYEYVSNQTLEHHLHGKGLPVLEWSKRVRIAIGSAKGLAYLHEDCHPK 490

  Fly   914 VVHRDLAARNVLISEDCVAKVSDFGLAREECYNLDVGKLPIK--------WTAPEALKNGRFSNK 970
            ::|||:.:.|:|:.::..|:|:||||||..    |..:..:.        :.|||...:|:.:::
plant   491 IIHRDIKSANILLDDEYEAQVADFGLARLN----DTTQTHVSTRVMGTFGYLAPEYASSGKLTDR 551

  Fly   971 SDMWSFGILLWEIYSFGRVPYPRI-PLAD----------VVKHVEVG 1006
            ||::|||::|.|:.: ||.|..:. ||.:          ::|.:|.|
plant   552 SDVFSFGVVLLELVT-GRKPVDQTQPLGEESLVEWARPLLLKAIETG 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 17/110 (15%)
PTKc_Csk_like 793..1047 CDD:270635 72/241 (30%)
STYKc 800..1044 CDD:214568 72/234 (31%)
PERK12NP_173768.2 STKc_IRAK 377..645 CDD:270968 70/227 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 128 1.000 Inparanoid score I1899
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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