DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and abl2

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:XP_005166946.1 Gene:abl2 / 570636 ZFINID:ZDB-GENE-020809-2 Length:1182 Species:Danio rerio


Alignment Length:583 Identity:197/583 - (33%)
Similarity:285/583 - (48%) Gaps:86/583 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   485 QTQQQQQTTNQQQQQQQQQASHSILSTFAPAPTVAAVQPAGSQSVAGTAAAVAAVAQQQQQQHLQ 549
            |||.|    :||||.:..:||.|                 |.:...|.....:.:.         
Zfish    17 QTQPQ----SQQQQGRSNRASSS-----------------GRRPRDGGGGGSSTLT--------- 51

  Fly   550 LLANCPPGGAG------LMSSSLNAAQMGMHGAERALPPKSLALSGSQHGSNM--LLHTAPQPPQ 606
             |...|||.:.      :....:|...:......|.....|.||:.:...|:.  ||..|...| 
Zfish    52 -LTGTPPGRSAAAAVNIMPDPGINVFTLHSEALHRPFGLDSTALTEAVRWSSKENLLGAAESDP- 114

  Fly   607 ASQPAAVVGVSGSGSAGMSTSLHSFDING-----VTAGS-----GVNASSAWSSGSTTAMNHASL 661
                            .:..:|:.|..:|     :|.|.     |.|.:..||  ...:.|....
Zfish   115 ----------------NLFVALYDFVASGDNTLSITKGEKLRVLGYNQNGEWS--EVRSKNGQGW 161

  Fly   662 SPT-ALAPQQGRSRCEVKLNAMPWFHGSITRDEAEHLLQPREDGLFLVRESTNFPGDYTLCVCFQ 725
            .|: .:.|..       .|....|:||.::|..||:||....:|.||||||.:.||..::.:.::
Zfish   162 VPSNYITPVN-------SLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRESESSPGQLSISLRYE 219

  Fly   726 SKVEHYRVKYL-ENKLTIDDEEYFENLGQLVAHYEADADGLCTQLIKCLPKLGKQEFCINSKDFV 789
            .:|.|||:... :.|:.:..|..|..|.:||.|:...||||.|.|....||..|.  .:.....:
Zfish   220 GRVYHYRINTASDGKVYVTAESRFSTLAELVHHHSTVADGLVTTLHYPAPKCNKP--TVYGVSPI 282

  Fly   790 DKGWVIPEAELQLRESIGKGEFGDVMLGILR--NEKVAVKMLK-DEGAVQKFLAEASVMTTLEHD 851
            ...|.:...::.::..:|.|::|:|.:|:.:  |..||||.|| |...|::||.|||||..::|.
Zfish   283 HDKWEMERTDITMKHKLGGGQYGEVYVGVWKKYNLTVAVKTLKEDTMEVEEFLKEASVMKEVKHP 347

  Fly   852 NLVKFIGLVFTSKHLYLVTEYMSKGSLVDYLRSRGRQHITKKDQIIFAYDTASGMEYLEAKKVVH 916
            |||:.:|:.......|:|||||..|:|:||||...|..:.....:..|...:|.|||||.|..:|
Zfish   348 NLVQLLGVCTLEPPFYIVTEYMPHGNLLDYLRECERDQVNAVVLLYMATQISSAMEYLEKKNFIH 412

  Fly   917 RDLAARNVLISEDCVAKVSDFGLAR---EECYNLDVG-KLPIKWTAPEALKNGRFSNKSDMWSFG 977
            |||||||.|:.|:.|.||:||||:|   .:.|....| |.||||||||:|....||.|||:|:||
Zfish   413 RDLAARNCLVGENHVVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFG 477

  Fly   978 ILLWEIYSFGRVPYPRIPLADVVKHVEVGYKMEAPEGCPPEIYEMMRQAWDLNPAKRPTFAEL 1040
            :|||||.::|..|||.|.|:.|...:|.||:||.||||||::||:||..|..:|..||:|||:
Zfish   478 VLLWEIATYGMSPYPGIDLSQVYDLLEKGYRMEQPEGCPPKVYELMRACWQWSPLDRPSFAEI 540

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 36/97 (37%)
PTKc_Csk_like 793..1047 CDD:270635 120/255 (47%)
STYKc 800..1044 CDD:214568 119/248 (48%)
abl2XP_005166946.1 SH3_Abl 116..169 CDD:212784 11/54 (20%)
SH2_ABL 174..267 CDD:198189 34/92 (37%)
PTKc_Abl 286..548 CDD:270645 120/255 (47%)
Pkinase_Tyr 293..544 CDD:285015 119/248 (48%)
FABD 1057..1182 CDD:197885
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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