DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and hck

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:NP_001015722.1 Gene:hck / 548439 XenbaseID:XB-GENE-6048191 Length:498 Species:Xenopus tropicalis


Alignment Length:504 Identity:172/504 - (34%)
Similarity:256/504 - (50%) Gaps:79/504 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   588 SGSQHGSNMLLHTAPQPPQASQPAAVVGVSGSGSAGMS----TSLHS-------------FDING 635
            |...|||...|    .||::::|.|......:.:|.|:    :|.|.             :|.:|
 Frog     6 SKDSHGSGKSL----GPPESTEPQAHYVKDPTSTAVMTKVERSSKHPKEEGQEEVVLLALYDYDG 66

  Fly   636 VTAG-----SGVNASSAWSSGSTTAMNHASLSPTALAPQQGRSRCEVKLNAMPWFHGSITRDEAE 695
            |..|     .|.:......||........|.......|....:|.: .|.:..|:...:.|.|||
 Frog    67 VHPGDLTFRKGDHLLLKKESGEWWEAYLISTREEGFVPSNYVARVD-SLESKEWYFKDMGRKEAE 130

  Fly   696 -HLLQPRED-GLFLVRESTNFPGDYTLCVCFQ-SKVEHYRVK-------YLENKLTIDDEEYFEN 750
             .||.|... |.|::|:|....|.::|.|... ..|.||:::       ::..::|      |.:
 Frog   131 RQLLSPLNTCGAFMIRDSETTKGSFSLSVRDSGDTVRHYKIRTHEDGGFFISTRIT------FPS 189

  Fly   751 LGQLVAHYEADADGLCTQLIKCL--------PKLGKQEFCINSKDFVDKGWVIPEAELQLRESIG 807
            |.:||:||:....|||    :||        |:          |.:....|.||...|.|::.:|
 Frog   190 LPELVSHYQGKMSGLC----QCLTVPCQTLRPE----------KPWEKDAWEIPRESLSLQKKLG 240

  Fly   808 KGEFGDVMLGILR-NEKVAVKMLKDEGAVQ--KFLAEASVMTTLEHDNLVKFIGLVFTSKHLYLV 869
            .|:||||.|.... :.:||||.:| .|::.  .||.||::|.:|:|:.||:...:|...:.:|:|
 Frog   241 TGQFGDVWLATYNGHTEVAVKTMK-AGSMSPAAFLEEANLMKSLQHERLVRLHAVVTQGEPIYIV 304

  Fly   870 TEYMSKGSLVDYLRS--RGRQHITKKDQII-FAYDTASGMEYLEAKKVVHRDLAARNVLISEDCV 931
            ||||.||||:|:|:|  ..||.:|   |:| |....|.||.::|.:..:||||.|.|.|:||..:
 Frog   305 TEYMHKGSLLDFLKSPEGSRQPVT---QLIDFCAQIAEGMWFIEQRNYIHRDLRAANCLVSETLL 366

  Fly   932 AKVSDFGLAR---EECYNLDVG-KLPIKWTAPEALKNGRFSNKSDMWSFGILLWEIYSFGRVPYP 992
            .|::||||||   :..|....| |.|||||:|||...|.|:.|||:||||:||.||.::||.|||
 Frog   367 CKIADFGLARVIEDSEYTAREGSKFPIKWTSPEAANYGSFTIKSDIWSFGVLLSEIMTYGRSPYP 431

  Fly   993 RIPLADVVKHVEVGYKMEAPEGCPPEIYEMMRQAWDLNPAKRPTFAELK 1041
            .:..::|:..:|.||:|..|..||.|:|.:|.|.|..:|.|||||..|:
 Frog   432 GMSNSEVMAALERGYRMPCPGTCPTELYGIMLQCWQQDPHKRPTFEYLQ 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 31/114 (27%)
PTKc_Csk_like 793..1047 CDD:270635 116/259 (45%)
STYKc 800..1044 CDD:214568 113/252 (45%)
hckNP_001015722.1 SH3 57..112 CDD:388381 10/54 (19%)
SH2_Src_family 115..211 CDD:199827 30/105 (29%)
PTKc_Src_like 237..484 CDD:270630 111/248 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D248674at33208
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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