DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and nck1

DIOPT Version :10

Sequence 1:NP_731611.2 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:NP_001008101.1 Gene:nck1 / 493463 XenbaseID:XB-GENE-6085807 Length:377 Species:Xenopus tropicalis


Alignment Length:77 Identity:25/77 - (32%)
Similarity:46/77 - (59%) Gaps:2/77 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   684 WFHGSITRDEAEHLLQPR-EDGLFLVRESTNFPGDYTLCVCFQSKVEHYRVKYLENKLTIDDEEY 747
            |::|.:||.:||..|..| .:|.||:|:|.:.|.|:::.:..|.|.:|::|:..:....|...: 
 Frog   282 WYYGKVTRHQAEMALNERGNEGDFLIRDSESSPNDFSVSLKAQGKNKHFKVQMKDCMYCIGQRK- 345

  Fly   748 FENLGQLVAHYE 759
            |..:.:||.||:
 Frog   346 FSTMEELVEHYK 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_731611.2 SH2_csk_like 680..777 CDD:198190 25/77 (32%)
PTKc_Csk_like 793..1047 CDD:270635
nck1NP_001008101.1 SH3_Nck1_1 4..62 CDD:212833
SH3_Nck1_2 108..162 CDD:212834
SH3_Nck1_3 193..249 CDD:212837
SH2_Nck1 280..376 CDD:198271 25/77 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.