DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and PERK9

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:NP_001320810.1 Gene:PERK9 / 3767664 AraportID:AT1G68690 Length:708 Species:Arabidopsis thaliana


Alignment Length:685 Identity:152/685 - (22%)
Similarity:237/685 - (34%) Gaps:195/685 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   354 PSVTVAAAAATGSTAGDPWFLQTTGHQMPPTAPLRHNKRP--APQPNAVLGAGSSGTAPGSAVGA 416
            |..|.....|.|  |..|...:......||..|:..:..|  :|.|..|:.:.....:|..|   
plant    55 PVTTSPPPVANG--APPPPLPKPPESSSPPPQPVIPSPPPSTSPPPQPVIPSPPPSASPPPA--- 114

  Fly   417 VLLHQQQLSQSQPHIVPP------------SIPPHHHHHRENNVHPIQAGAAAALHLSSHALNSH 469
             |:.....|...|..|||            |.||        :|.|||         |.....|.
plant   115 -LVPPLPSSPPPPASVPPPRPSPSPPILVRSPPP--------SVRPIQ---------SPPPPPSD 161

  Fly   470 NLISSASNHSPKSPSQTQQQQQTTNQQQQQQQQQASHSILSTFAPAPTVAAVQPAGSQSVAGTAA 534
            ....|....||.||...:..|...:...::..|          :|.|......|:...|     .
plant   162 RPTQSPPPPSPPSPPSERPTQSPPSPPSERPTQ----------SPPPPSPPSPPSDRPS-----Q 211

  Fly   535 AVAAVAQQQQQQHLQLLANCPPGGAGLMSSSLNAAQMGMHGAERALPPKS---LALSGSQHGS-- 594
            :.....:..:.|..:...|.||   ...||                ||:|   :.:.||.:.|  
plant   212 SPPPPPEDTKPQPPRRSPNSPP---PTFSS----------------PPRSPPEILVPGSNNPSQN 257

  Fly   595 NMLLHTAPQPPQASQ-----PAAVVGVSGSGSAGMSTSLHSFDINGV---TAGSGVNASSAWSSG 651
            |..|......|.::.     ..||||:|      ::.:|..|.:.|:   .........||.|.|
plant   258 NPTLRPPLDAPNSTNNSGIGTGAVVGIS------VAVALVVFTLFGIFVWCLRKREKRLSAVSGG 316

  Fly   652 STTAMNHASLSPTALAPQQGRSRCEVKLNAMPWFHGSITRDEAEHLLQPREDGLFLVRESTNFPG 716
            ..|.   :.:|.||                                   |.|..|...:|:...|
plant   317 DVTP---SPMSSTA-----------------------------------RSDSAFFRMQSSAPVG 343

  Fly   717 DYTLCVCFQSKVEHYRVKYLENKLTIDDEEYFENLGQLVAHYEADADGLCTQLIKCLPKLGKQEF 781
            .......:||:                    ...||...|.:..:      :|:|......::..
plant   344 ASKRSGSYQSQ--------------------SGGLGNSKALFSYE------ELVKATNGFSQENL 382

  Fly   782 CINSKDFVDKGWVIPEAELQLRESIGKGEFGDVMLGILRNEK-VAVKMLKDEGAV--QKFLAEAS 843
                                    :|:|.||.|..|||.:.: ||||.||..|..  ::|.||..
plant   383 ------------------------LGEGGFGCVYKGILPDGRVVAVKQLKIGGGQGDREFKAEVE 423

  Fly   844 VMTTLEHDNLVKFIGLVFTSKHLYLVTEYMSKGSLVDYLRSRGRQHITK-KDQIIFAYDTASGME 907
            .::.:.|.:||..:|...:.....|:.:|:|...|  |....|.:.:.. ..::..|...|.|:.
plant   424 TLSRIHHRHLVSIVGHCISGDRRLLIYDYVSNNDL--YFHLHGEKSVLDWATRVKIAAGAARGLA 486

  Fly   908 YLEA---KKVVHRDLAARNVLISEDCVAKVSDFGLAR--EECYNLDVGKLPI---KWTAPEALKN 964
            ||..   .:::|||:.:.|:|:.::..|:||||||||  .:| |..:....|   .:.|||...:
plant   487 YLHEDCHPRIIHRDIKSSNILLEDNFDARVSDFGLARLALDC-NTHITTRVIGTFGYMAPEYASS 550

  Fly   965 GRFSNKSDMWSFGILLWEIYSFGRVPYPRI-PLAD 998
            |:.:.|||::|||::|.|:.: ||.|.... ||.|
plant   551 GKLTEKSDVFSFGVVLLELIT-GRKPVDTSQPLGD 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 12/96 (13%)
PTKc_Csk_like 793..1047 CDD:270635 68/219 (31%)
STYKc 800..1044 CDD:214568 68/212 (32%)
PERK9NP_001320810.1 STKc_IRAK 383..652 CDD:270968 68/206 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 128 1.000 Inparanoid score I1899
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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