DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and Fak

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:NP_001137718.1 Gene:Fak / 37233 FlyBaseID:FBgn0020440 Length:1500 Species:Drosophila melanogaster


Alignment Length:534 Identity:142/534 - (26%)
Similarity:219/534 - (41%) Gaps:138/534 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   584 SLALSGSQHGSNMLLHTAPQ-------PPQAS-----QPAAVVGV----------SGSGSAGMST 626
            |:.||.:.:.|. :||..|.       .||||     |...||.:          |.||......
  Fly   268 SVTLSSAWNISG-ILHVGPHIGISYQTHPQASLKNVAQFKDVVSIKTCTLPKEKLSKSGENTTEP 331

  Fly   627 SLHSFDIN--------GVTAGSGVNASSAWSSGSTTAMNHASLSPTALAPQQGRSRCEVKLNAMP 683
            .|.:|:.|        .::|.:.|.......:|..||.:.|.|.       .|..|         
  Fly   332 ELQNFNCNCQKIKTQIKISASNNVEDLVITCNGINTAESIADLI-------DGYCR--------- 380

  Fly   684 WFHGSITRDEAEHLLQPREDGLFLVRESTNFPGDYTLCVCFQSKVEHYRVKYLENKLTIDD---- 744
                 :...:.|..:..||........:...|.|.||.               .||.|...    
  Fly   381 -----LLSKDLEFTIWHRETNASNEDSAKALPNDATLG---------------SNKSTSSQGKPM 425

  Fly   745 --EEYFENLGQLVAHYEADADGLCTQLIKCLPKLGKQEFCINSKDFVDKGWVIPEAELQLRESIG 807
              ::|.| :|.|    |.:.|       ...|.:...|        :|:..:.|.|:      ||
  Fly   426 LTDDYAE-IGLL----EGEGD-------YSTPTVRNYE--------LDRALITPSAK------IG 464

  Fly   808 KGEFGDVMLGIL----------------------RNE-------KVAVKMLK---DEGAVQKFLA 840
            .|:||||.:|..                      ||.       :||:|..|   |....:.|||
  Fly   465 VGQFGDVYVGTYTLPKLGKGKNLAGNGKNSNSDQRNADSRPDVIQVAIKTCKANDDPEKTENFLA 529

  Fly   841 EASVMTTLEHDNLVKFIGLVFTSKHLYLVTEYMSKGSLVDYLRSRGRQHITKKDQIIFAYDTASG 905
            ||.:|...:|.::::.|| :.:...:::|.|....|.|..||::.. :.::....:.:.|..::.
  Fly   530 EAYIMQKFDHPHIIRLIG-ICSVMPIWIVMELAKLGELRAYLKTNS-ERLSHGTLLKYCYQLSTA 592

  Fly   906 MEYLEAKKVVHRDLAARNVLISEDCVAKVSDFGLAR---EECY--NLDVGKLPIKWTAPEALKNG 965
            :.|||:||.||||:||||||:|.....|::||||:|   ::.|  :.....|||||.:||::...
  Fly   593 LSYLESKKFVHRDIAARNVLVSSPTCVKLADFGLSRWVSDQSYYHSTPTVALPIKWMSPESINFR 657

  Fly   966 RFSNKSDMWSFGILLWEIYSFGRVPYPRIPLADVVKHVEVGYKMEAPEGCPPEIYEMMRQAWDLN 1030
            ||:..||:|.||:.:|||...|..|:..:..:||:..:|.|.::..|..|||.:|.:|.|.|...
  Fly   658 RFTTASDVWMFGVCIWEILMLGVKPFQGVKNSDVILKLENGERLPLPPNCPPRLYSLMSQCWAYE 722

  Fly  1031 PAKRPTFAELKVKL 1044
            |.|||.|..:|..|
  Fly   723 PLKRPNFKRIKETL 736

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 17/102 (17%)
PTKc_Csk_like 793..1047 CDD:270635 94/289 (33%)
STYKc 800..1044 CDD:214568 91/280 (33%)
FakNP_001137718.1 B41 24..267 CDD:214604
FERM_B-lobe 152..257 CDD:271216
FERM_C_FAK1 263..394 CDD:270011 30/147 (20%)
PTKc_FAK 450..744 CDD:133187 96/303 (32%)
Pkinase_Tyr 462..736 CDD:285015 91/281 (32%)
Focal_AT 1249..1376 CDD:281606
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45468358
Domainoid 1 1.000 165 1.000 Domainoid score I1208
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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