DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and src

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:XP_017209008.1 Gene:src / 325084 ZFINID:ZDB-GENE-030131-3809 Length:549 Species:Danio rerio


Alignment Length:537 Identity:184/537 - (34%)
Similarity:255/537 - (47%) Gaps:66/537 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   556 PGGAGLMSSSLNAAQMGMH----GAERALPPKSLALSGSQHGSNMLLHTAPQPPQASQPAAVVGV 616
            |...|..|.||:....|.|    ......|.:|..:.||:.|      |.|....|.| |...||
Zfish     8 PKELGQRSRSLDDGTGGHHHHTPNPTSFTPNRSPPVEGSRRG------TQPNIINAEQ-ALFGGV 65

  Fly   617 SGSGSA-----------GMSTSLHSFDINGVTAGS------------------GVNASSAWSSGS 652
            :.:.::           |::|.:..:|....||..                  .......|.:.|
Zfish    66 NSTTNSITSPNRIGILGGVTTFVALYDYESRTASDLSFRKGERLQIVNNTRKLNPREGDWWLARS 130

  Fly   653 TTAMNHASLSPTALAPQ---QGRSRCEVKLNAMPWFHGSITRDEAEHLLQPRED--GLFLVREST 712
            .|......:....:||.   |......:.|... |:.|.|||.::|.||...|:  |.||||||.
Zfish   131 LTTGESGYIPSNYVAPSDSIQAEDHLRLTLEKR-WYFGKITRRDSERLLLNLENRRGTFLVRESE 194

  Fly   713 NFPGDYTLCVCFQS-----KVEHYRVKYLEN-KLTIDDEEYFENLGQLVAHYEADADGLCTQLIK 771
            ...|.|.|.|....     .|:||:::.|:: ...|.....|..|.|||.||...|||||..|..
Zfish   195 TTKGAYCLSVLDYDNVKGLNVKHYKIRKLDSGGFYITSRTQFSTLQQLVNHYRQHADGLCHSLTD 259

  Fly   772 CLPKLGKQEFCINSKDFVDKGWVIPEAELQLRESIGKGEFGDVMLGILR-NEKVAVKMLKDEGAV 835
            ..|.|...     ::......|.||...|:|...:|:|.||:|.:|... ..:||:|.|| .|.:
Zfish   260 VCPVLKPP-----TQGLARDAWEIPRDSLRLDVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTM 318

  Fly   836 --QKFLAEASVMTTLEHDNLVKFIGLVFTSKHLYLVTEYMSKGSLVDYLRSRGRQHITKKDQIIF 898
              :.||.||.||..|.|:.||:...:| :.:.:|:|||||.:|||:|:|:....:.:.....:..
Zfish   319 SPEAFLQEAQVMKKLRHEKLVQLYAVV-SEEPIYIVTEYMGQGSLLDFLKGDMGKMLRLPQLVDM 382

  Fly   899 AYDTASGMEYLEAKKVVHRDLAARNVLISEDCVAKVSDFGLAR---EECYNLDVG-KLPIKWTAP 959
            |...||||.|:|....|||||.|.|:|:.::.|.||:||||||   :..|....| |.|||||||
Zfish   383 ASQIASGMAYVERMNYVHRDLRAANILVGDNLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAP 447

  Fly   960 EALKNGRFSNKSDMWSFGILLWEIYSFGRVPYPRIPLADVVKHVEVGYKMEAPEGCPPEIYEMMR 1024
            ||...|||:.|||:|||||||.|:.:.||||||.:...:|:..||.||:|..|..||..::|:|.
Zfish   448 EAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPAECPDSLHELML 512

  Fly  1025 QAWDLNPAKRPTFAELK 1041
            ..|...|.:||||..|:
Zfish   513 TCWRKEPEERPTFEYLQ 529

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 39/104 (38%)
PTKc_Csk_like 793..1047 CDD:270635 113/256 (44%)
STYKc 800..1044 CDD:214568 110/249 (44%)
srcXP_017209008.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D248674at33208
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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