DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and Y52D5A.2

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:NP_500813.3 Gene:Y52D5A.2 / 190185 WormBaseID:WBGene00021793 Length:544 Species:Caenorhabditis elegans


Alignment Length:433 Identity:120/433 - (27%)
Similarity:204/433 - (47%) Gaps:84/433 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   651 GSTTAMNHASLSPTALAPQQGRSRCEVKLNAMPWFHGSITRDEAEHLLQPREDGLFLVRESTNFP 715
            |:....:..:||.|::............|..:..:||.:...|.|.:||  .|..:|||.:...|
 Worm    45 GNKNVSSSMTLSNTSMHDDPEEEYIRNHLINLHVYHGVLFGSEVEKILQ--WDRSYLVRRAITEP 107

  Fly   716 GDYTLCVC--FQSKVEHYRVKYLENKLTIDDEEYFENLGQLVAHYEADADG-LCTQLIKCLPKLG 777
            ....||:.  :::||.||::.:                         :.|| .||:|.:..|.:.
 Worm   108 MKKFLCISVNWKNKVFHYQLDF-------------------------NDDGWSCTKLYEKFPPMP 147

  Fly   778 KQEFCINSKDFVDKGW------VIP---------EAELQLRESIGKGEFGDVMLGILR-----NE 822
            |:.|...|:  :.:.|      :||         .:.:.|.:.:|.|.||.|..|..:     |.
 Worm   148 KRRFLHMSQ--LLEVWSQATPFLIPMPRRPNVLFHSTVLLEKKLGSGAFGVVFKGKYQAFGSTNP 210

  Fly   823 --KVAVKML---KDEGAVQKFLAEASVMTTLEHDNLVKFIGLVFTSKHLYLVTEYMSKGSLVDYL 882
              :||||.:   .:...:|:|..||.:|:.|:|||:|.|.|.....:.:.:|.|       :.||
 Worm   211 PLEVAVKRIIGNSNRKQIQEFCNEAQIMSMLQHDNMVAFRGFASLEEPIMVVME-------LKYL 268

  Fly   883 RSRGRQHITKKDQIIFAYDTASGMEYLEAKKVVHRDLAARNVLISEDCVAKVSDFGLAREECYNL 947
            |:  .:.|.|:....||.:.||||::|.:|.::||||||||.|:::|..||:|||||:   |...
 Worm   269 RT--TRDIPKRQIFWFAMNVASGMKHLSSKGIIHRDLAARNCLVTQDLKAKISDFGLS---CQGT 328

  Fly   948 DVG-----KLPIKWTAPEALKNGRFSNKSDMWSFGILLWEIYSFGRVPY-PRIPLADVVKHVEVG 1006
            :|.     :.|::|.|||:..:|.|:.|:|:||:|:||.|:.:  |..: |..|::  :|..:..
 Worm   329 EVTVTNLCRAPLRWMAPESFNSGTFNEKTDVWSYGVLLTELMT--RCEHDPLYPMS--LKDAKAW 389

  Fly  1007 YKMEA-----PEGCPPEIYEMMRQAWDLNPAKRPTFAELKVKL 1044
            ...|:     ..|.|.|:..::....|.|...|..|..:|.::
 Worm   390 IASESFPHRIVNGDPKELMSLVDACCDKNVKDRIKFNTVKRRI 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 23/99 (23%)
PTKc_Csk_like 793..1047 CDD:270635 89/288 (31%)
STYKc 800..1044 CDD:214568 86/264 (33%)
Y52D5A.2NP_500813.3 SH2 79..163 CDD:214585 27/112 (24%)
TyrKc 183..432 CDD:197581 86/264 (33%)
PTKc 187..432 CDD:270623 85/260 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.