DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and txk

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:XP_003201292.4 Gene:txk / 100534735 ZFINID:ZDB-GENE-130530-553 Length:509 Species:Danio rerio


Alignment Length:382 Identity:139/382 - (36%)
Similarity:211/382 - (55%) Gaps:32/382 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   679 LNAMPWFHGSITRDEAEHLL-QPREDGLFLVRESTNFPGDYTLCV---CF-QSKVEHYRVKYL-E 737
            :.|..|:..:|.|.|||||| |..:||.|:||.|:. |..||:.|   |. :.:|.||::|.. |
Zfish   126 IEANDWYCKNINRAEAEHLLRQEGKDGGFVVRSSSQ-PSTYTVSVYTHCSGKGEVRHYQIKRTDE 189

  Fly   738 NKLTIDDEEYFENLGQLVAHYEADADGLCTQLI-------KCLPKLGKQEFCINSKDFVDKGWVI 795
            :|..:.:...|.::.:|:.:::.:|.||..:|.       ||.|.         :..|......|
Zfish   190 DKFYLAENHVFISIPELINYHKYNAAGLVARLRYPIGPKGKCQPA---------TAGFSSDKMEI 245

  Fly   796 PEAELQLRESIGKGEFGDVMLGILR-NEKVAVKMLKDEGAVQK--FLAEASVMTTLEHDNLVKFI 857
            ..:||...:.:|.|:||.|.||..| ..|||:|.:: |||:.:  |:.||.:||.|.|..||:..
Zfish   246 NPSELTFMKELGSGQFGVVRLGKWRAQHKVAIKTIR-EGAMNEDDFIEEAKIMTRLCHPKLVQLY 309

  Fly   858 GLVFTSKHLYLVTEYMSKGSLVDYLRSRGRQHITKKDQIIFAYDTASGMEYLEAKKVVHRDLAAR 922
            |:..|.:.:.:|||:|..|.|:.:||...:. :.:...:....|...||||||..:.:|||||||
Zfish   310 GVCVTQRPICIVTEFMENGCLLHFLRQHSKT-LGRSQMLCMCQDVCEGMEYLEHNQFIHRDLAAR 373

  Fly   923 NVLISEDCVAKVSDFGLAR---EECYNLDVG-KLPIKWTAPEALKNGRFSNKSDMWSFGILLWEI 983
            |.|::|..|.||.|||:.|   :..|...:| :.|:||:.||.|...:||||||:||||:|:||:
Zfish   374 NCLVNERNVVKVCDFGMTRYVLDNQYTSSMGSRFPVKWSPPEVLHFNKFSNKSDVWSFGVLMWEV 438

  Fly   984 YSFGRVPYPRIPLADVVKHVEVGYKMEAPEGCPPEIYEMMRQAWDLNPAKRPTFAEL 1040
            :|.|:.|:......:||:.|..|.::..|....|.||.:|.:.|...|..||.|:||
Zfish   439 FSEGKTPFDNRTNVEVVEEVTQGSRLYRPHLATPHIYNIMYRCWHERPHGRPAFSEL 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 37/109 (34%)
PTKc_Csk_like 793..1047 CDD:270635 101/255 (40%)
STYKc 800..1044 CDD:214568 99/248 (40%)
txkXP_003201292.4 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.