DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Csk and fgr

DIOPT Version :9

Sequence 1:NP_001262476.1 Gene:Csk / 41398 FlyBaseID:FBgn0262081 Length:1052 Species:Drosophila melanogaster
Sequence 2:XP_002934688.1 Gene:fgr / 100493811 XenbaseID:XB-GENE-6073541 Length:519 Species:Xenopus tropicalis


Alignment Length:520 Identity:182/520 - (35%)
Similarity:264/520 - (50%) Gaps:78/520 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   569 AQMGMHGAERALPPKSLALSGSQHGSNMLLHTAPQPPQASQPAAVVGVSGSGSAGMS--TSLHSF 631
            :||.....|...|..|..:.|...||             ||....|||:|    |::  .:|:.:
 Frog    31 SQMPFRIQETHTPFISAGIGGVIAGS-------------SQRGMGVGVTG----GVTQFIALYDY 78

  Fly   632 DI---NGVTAGSG-----VNASSA--WSSGSTTAMNHASLSPTALAPQQGRSRCEVKLNAMPWFH 686
            |.   :.:|...|     :|.|..  |.:.|.::.|...:....:||..       .:.:..|:.
 Frog    79 DARTEDDLTFKKGEKFHIINNSEGDWWEARSLSSGNTGYIPSNYVAPMN-------SIQSKDWYF 136

  Fly   687 GSITRDEAEHLL----QPREDGLFLVRESTNFPGDYTLCV-----CFQSKVEHYRVKYLEN-KLT 741
            |.|.|.:||.||    .||  |.|::|||....|.|:|.|     ......:||:::.|:| ...
 Frog   137 GKIGRKDAERLLLCEGNPR--GTFMIRESETTKGAYSLSVRDWDATRGDHAKHYKIRKLDNGGFY 199

  Fly   742 IDDEEYFENLGQLVAHYEADADGLCTQLIKCLPKLGKQEFCIN--------SKDFVDKGWVIPEA 798
            |.....|:.:.:||.||....||||..|..  |       |||        |||    .|.|...
 Frog   200 ITTRVQFDTVEELVEHYSEFNDGLCHLLTN--P-------CINQKPQTLGLSKD----AWEITRD 251

  Fly   799 ELQLRESIGKGEFGDVMLGILR-NEKVAVKMLKDEG-AVQKFLAEASVMTTLEHDNLVKFIGLVF 861
            .:.|.:.:|:|.||||..|... ...||||.||... :.:.||.||.:|..|.||.||:...:| 
 Frog   252 SISLDKKLGQGCFGDVWKGTWNGTTNVAVKTLKPSTMSPEAFLEEAQIMKKLRHDKLVQLYAVV- 315

  Fly   862 TSKHLYLVTEYMSKGSLVDYLRSRGRQHITKKDQII-FAYDTASGMEYLEAKKVVHRDLAARNVL 925
            :.:.:|:|||:|:||||:|||: .|..|:.|..|:: .:...||||.|:|....:||||.|.|:|
 Frog   316 SEEPIYIVTEFMTKGSLLDYLK-EGEGHLLKLPQLVDMSGQIASGMAYIERMNYIHRDLRAANIL 379

  Fly   926 ISEDCVAKVSDFGLAR---EECYNLDVG-KLPIKWTAPEALKNGRFSNKSDMWSFGILLWEIYSF 986
            :.::.:.|::||||||   :..|....| |.|||||||||...|:|:.|||:|||||::.|:.:.
 Frog   380 VGDNLICKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGKFTIKSDVWSFGIMVCELVTK 444

  Fly   987 GRVPYPRIPLADVVKHVEVGYKMEAPEGCPPEIYEMMRQAWDLNPAKRPTFAELKVKLQLLNNAT 1051
            ||:|||.:...:|::.||.||:|.||..|||.::|:|.|.|..:|.:||||..|:..|:....||
 Frog   445 GRIPYPGMSNREVLEQVERGYRMPAPPACPPSLHELMLQCWRGDPEERPTFEYLQSFLEDYFTAT 509

  Fly  1052  1051
             Frog   510  509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CskNP_001262476.1 SH2_csk_like 680..777 CDD:198190 35/106 (33%)
PTKc_Csk_like 793..1047 CDD:270635 113/260 (43%)
STYKc 800..1044 CDD:214568 110/250 (44%)
fgrXP_002934688.1 SH3 72..125 CDD:388381 9/52 (17%)
SH2_Src_Fgr 130..230 CDD:198230 34/103 (33%)
PTKc_Src_Fyn_like 257..504 CDD:271105 110/248 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D248674at33208
OrthoFinder 1 1.000 - - FOG0000006
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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