DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG6813 and pita

DIOPT Version :9

Sequence 1:NP_001163590.1 Gene:CG6813 / 41396 FlyBaseID:FBgn0037923 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_611806.3 Gene:pita / 37730 FlyBaseID:FBgn0034878 Length:683 Species:Drosophila melanogaster


Alignment Length:451 Identity:93/451 - (20%)
Similarity:145/451 - (32%) Gaps:190/451 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRICSRSDAPIDLFGPG-----NGHLVRQIHSITGVELSCKKEISGQMCTTCLDNLQAAIKFRQR 65
            ||.|........:|...     ..:|..||.:||.:|:.....:.|.:|..|....:...:|:|.
  Fly    18 CRFCLTEQKLASIFEENPRVKTTANLPLQIMAITAIEVYAGDGMPGHICLECRLLFEHCYRFKQM 82

  Fly    66 C----------------------------IIAEKQNL-------ERIECDSKDCST-----DPII 90
            |                            ::|.|:.|       |..|...|..:|     ..:|
  Fly    83 CKRAETLLRQYPLTGNWPSPLEKPRAPMTMVASKKLLVVPAKTAEPSETPKKLLNTMAKSSSQVI 147

  Fly    91 YED------------------------------IDDNQ-------------IESELDES------ 106
            .||                              :|:||             :.|||::.      
  Fly   148 IEDVQVLESAMVTPRTVAGSSPVPRRSHAYELKVDNNQELSMDDVQSMLEDMASELEKEFPDIPQ 212

  Fly   107 -----------------------------ILCPEVK----------------DLPM-------PS 119
                                         :..|:||                |||:       .:
  Fly   213 KASPVKPKVLNKSSIRILNKGPAAPVEPRLATPKVKRDDSGNVAIVTEVLDSDLPLDDQDDPTKN 277

  Fly   120 AEKVSAPTSLNHQKSIGGGTGPYVCPDCGRIINNKSNFQEHTLRHTGIKNFHCVFLNCERSFATR 184
            ||||:              |..:.||||.|....:...:.|.|.||..::|.|  |.||:||.::
  Fly   278 AEKVA--------------TDVFPCPDCERSFPLQQLLEIHRLNHTRSRSFQC--LLCEKSFFSK 326

  Fly   185 KELTSHTRIHTGEQP----------------------------YVCVYCPRRFSSSGARQEHHRR 221
            .:|..|..:||||:|                            ::||||.:.|.|....::|..|
  Fly   327 YDLAKHNFVHTGERPFKCAICSKAFTRKALLHRHERTHTDVPKFICVYCEKPFLSRQEMEKHAER 391

  Fly   222 HRNERRYECDTCKKSFVSSGCLRKHKMIHVDARNHYCYVCQKHFKRISHLMTHLSSNIHKR 282
            |:.:|.::|..|.|||.....|.:|:.:|.......|..|::.|...|.|..||.::..||
  Fly   392 HQKKRPFQCGVCTKSFAFKQGLERHETVHSTNLPFPCQHCERSFSTASKLARHLVAHAGKR 452

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG6813NP_001163590.1 zf-AD 6..76 CDD:285071 19/109 (17%)
C2H2 Zn finger 144..164 CDD:275368 7/19 (37%)
C2H2 Zn finger 172..194 CDD:275368 8/21 (38%)
zf-H2C2_2 186..211 CDD:290200 12/52 (23%)
UFD2 <256..>294 CDD:227443 9/27 (33%)
C2H2 Zn finger 258..280 CDD:275368 7/21 (33%)
pitaNP_611806.3 zf-AD 17..92 CDD:214871 16/73 (22%)
COG5048 <281..506 CDD:227381 52/188 (28%)
C2H2 Zn finger 288..308 CDD:275368 7/19 (37%)
C2H2 Zn finger 316..336 CDD:275368 8/21 (38%)
zf-H2C2_2 328..353 CDD:290200 7/24 (29%)
C2H2 Zn finger 344..364 CDD:275368 0/19 (0%)
C2H2 Zn finger 372..388 CDD:275370 6/15 (40%)
C2H2 Zn finger 400..420 CDD:275368 7/19 (37%)
C2H2 Zn finger 428..448 CDD:275368 7/19 (37%)
C2H2 Zn finger 456..476 CDD:275368
C2H2 Zn finger 486..506 CDD:275368
HARE-HTH <566..625 CDD:294801
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I2531
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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