DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and Usp6nl

DIOPT Version :10

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_852064.2 Gene:Usp6nl / 98910 MGIID:2138893 Length:842 Species:Mus musculus


Alignment Length:307 Identity:97/307 - (31%)
Similarity:147/307 - (47%) Gaps:36/307 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 IAREKKWLYMIDNWSIYMSKNYKKIRDRCRKGIPKSVRPKAWFYLSGAYLLKKKNPNVYNELLEK 110
            |.|..|||.|:..|..|  ||.:|...|..||||..:|.:.|..|.....:|::..::|::|..:
Mouse    94 IERTSKWLKMLKKWERY--KNTEKFHRRIYKGIPLQLRGEVWALLLEIPKMKEETRDLYSKLKHR 156

  Fly   111 P-GNPTTIEEIKKDKHRQFPFHEMFLDEQKVGQIELFNVLKAYSIYNPKVGFCQAQAPIAAFLLM 174
            . |....|.:|..|.:|.|..|.||.|...|.|..||:||.||||||.:||:||..:.|.|.|||
Mouse   157 ARGCSPDIRQIDLDVNRTFRDHIMFRDRYGVKQQSLFHVLAAYSIYNTEVGYCQGMSQITALLLM 221

  Fly   175 HLPAEDAFWVFVSVCD---VYLQDYFIPGLEVIQNDAGILEGLLKKTCPPVYRHLQKHKVEPLLY 236
            ::..|||||..|.:..   ..:..:|:.|...:.......|.:|.|....:.:||...::....|
Mouse   222 YMNEEDAFWALVKLFSGPKHAMHGFFVQGFPKLLRFQEHHEKILNKFLSKLKQHLDSQEIYTSFY 286

  Fly   237 MTDWFL-CAMTRTLPWETLLRVWDCFLAEGIRVIFKVALVIIGASLSRHK-------VRKTCTGL 293
            ...||. |.:.|| |:...||:||.::.||.||:..::..|    |..||       :.:....|
Mouse   287 TMKWFFQCFLDRT-PFRLNLRIWDIYIFEGERVLTAMSYTI----LKLHKKHLMKLSMEELVEFL 346

  Fly   294 CETLAVLRSPEEHIVEEEFIINNMMRLNLRVEDFQIEHTRQKARRAK 340
            .||||     ::...|::|:|.            |::.:..:.:|||
Mouse   347 QETLA-----KDFFFEDDFVIE------------QLQVSMAELKRAK 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 TBC 74..278 CDD:214540 70/208 (34%)
Usp6nlNP_852064.2 TBC 120..335 CDD:214540 73/219 (33%)
PTZ00449 <526..>738 CDD:185628
Blue background indicates that the domain is not in the aligned region.

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