DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and PAM1

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_197097.1 Gene:PAM1 / 831450 AraportID:AT5G15930 Length:356 Species:Arabidopsis thaliana


Alignment Length:351 Identity:104/351 - (29%)
Similarity:176/351 - (50%) Gaps:41/351 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DRNGF----YGGF-QRTDKPKEPLSKAQIIAREKKWLYMI----DNWSIYMSKNYKKIRDRCRKG 77
            ||.||    :|.. ||..|.|..::..:...|..||..||    .:|..|:.:....::.|.|||
plant    21 DRFGFLKQEHGSSPQRFTKTKSSINYEKEEKRVTKWRKMIGTGGSDWKHYVRRKPHVVKRRIRKG 85

  Fly    78 IPKSVRPKAWFYLSGAYLLKKKNPNVYNELLEKPGNPTTIEEIKKDKHRQFPFHEMFLDEQKVGQ 142
            ||..:|...|..:||:..|...||.||.:|:....:.:.: :|.:|..|.||.|..|......||
plant    86 IPDCLRGLVWQLISGSRDLLLMNPGVYVQLVIYETSASEL-DIIRDISRTFPSHVFFQKRHGPGQ 149

  Fly   143 IELFNVLKAYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVCD--VY--LQDYFIPGLEV 203
            ..|:|||||||:|:..||:.|....||..||:::..|||||:.|::..  |:  ::..:..||.:
plant   150 RSLYNVLKAYSVYDRDVGYVQGMGFIAGLLLLYMSEEDAFWLLVALLKGAVHSPIEGLYQAGLPL 214

  Fly   204 IQNDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLPWETLLRVWDCFLAEGIRV 268
            :|......:.|:::..|.:..|..:..:.|.:|.:.||:...:.:||:.:.||:||.|||||:::
plant   215 VQQYLLQFDQLVRELMPKLGEHFTQEMINPSMYASQWFITVFSYSLPFHSALRIWDVFLAEGVKI 279

  Fly   269 IFKVALVIIGASLSRHKVRKTCTGLC----------ETLAVLRSPEEHIVEEEFIINNMMRLNLR 323
            :|||     |.:|.:|         |          |.:..||:..|..::.:.::  .:..:::
plant   280 VFKV-----GLALLKH---------CHDDLLKLPFEELMHALRNFPEDAMDPDTLL--PLAYSIK 328

  Fly   324 VEDFQIEHTRQKARRAKQKAQQEAES 349
            |.. ::|..:|...:|..|..|.|:|
plant   329 VSK-RLEEMKQDCDKAVAKPTQTAKS 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 56/166 (34%)
PAM1NP_197097.1 TBC 82..296 CDD:214540 75/228 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 170 1.000 Inparanoid score I1545
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D976276at2759
OrthoFinder 1 1.000 - - FOG0001498
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1223
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.870

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