DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment wkd and Tbc1d8

DIOPT Version :10

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:XP_006244913.1 Gene:Tbc1d8 / 680133 RGDID:1595491 Length:1150 Species:Rattus norvegicus


Alignment Length:404 Identity:110/404 - (27%)
Similarity:173/404 - (42%) Gaps:89/404 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TAPRSLDTIS-LCSTVSSCPDRNGFYGGF--------QRTDKPKEPL----------------SK 42
            |:|...|..| :..:.|.|.|:   :|..        :..:|.|.||                |.
  Rat   419 TSPSDDDMASPVFYSTSICTDK---FGDLEMVSSQSSEEREKEKSPLPHPEPLTAVFQQSGSQSP 480

  Fly    43 AQIIAREKKWLYMIDNWSIYMSK--------NYKKIRDRCRKGIPKSVRPKAWFYLSGAYLLKKK 99
            ...::||:   ..|..|:.:.::        ..:|||.....|||:|:|.:.|...|.|......
  Rat   481 DSRLSREQ---IKISLWNDHFAEYGRTVCMFRTEKIRKLVAMGIPESLRGRLWLLFSDAVTDLAS 542

  Fly   100 NPNVYNELLEKP-GNPTTI-EEIKKDKHRQFPFHEMFLDEQKVGQIELFNVLKAYSIYNPKVGFC 162
            :|..|..|:|:. |....: |||::|.||..|.|..|.:|  .|...|..||.||:..|||:|:|
  Rat   543 HPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEHPAFQNE--TGIAALRRVLTAYAHRNPKIGYC 605

  Fly   163 QAQAPIAAFLLMHLPAEDAFWVFVSVCDVYLQDYFIPGLEVIQNDAGILEGLLKKTCPPVYRHLQ 227
            |:...:.:.||::...|:|||:.|:||:..|.|||...:...|.|..:.|.|:|:..|.:..|:.
  Rat   606 QSMNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNHRVIGAQVDQSVFEELIKEHLPELAEHMS 670

  Fly   228 KHKVEPLLYMTDWFLCAMTRTLPWETLLRVWDCFLAEGIRVIFKVALVIIGASLSRHKVRKTCTG 292
            .......:.:: |||......:|.|:.:.|.|||..:||:.||::.|.::.|:...         
  Rat   671 DLSALASISLS-WFLTLFLSIMPLESAVNVVDCFFYDGIKAIFQLGLAVLEANAEE--------- 725

  Fly   293 LC------ETLAVLRSPEEHIVEEE-----------FI-----------INNMMR------LNLR 323
            ||      :.|.:|....:||..|:           |.           |.:::|      .|..
  Rat   726 LCSSKDDGQALMILSRFLDHIKNEDSPGPPIGSHHAFFSDDQEPCPVTDIADLIRDSYEKFGNQS 790

  Fly   324 VEDFQIEHTRQKAR 337
            ||  ||||.|.|.|
  Rat   791 VE--QIEHLRCKHR 802

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 TBC 74..278 CDD:214540 69/205 (34%)
Tbc1d8XP_006244913.1 PH-GRAM1_TBC1D8 171..269 CDD:270156
PH-GRAM2_TBC1D8 311..406 CDD:270160
TBC 520..726 CDD:214540 70/217 (32%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.