DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and Tbc1d8

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:XP_017177250.1 Gene:Tbc1d8 / 54610 MGIID:1927225 Length:1160 Species:Mus musculus


Alignment Length:365 Identity:102/365 - (27%)
Similarity:155/365 - (42%) Gaps:80/365 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 FQR--TDKPKEPLSKAQIIAREKKWLYMIDNWSIYMSK--------NYKKIRDRCRKGIPKSVRP 84
            ||:  :..|...||:.||         .|..|:.:..:        ..:|||.....|||:|:|.
Mouse   471 FQQSGSQSPDSRLSREQI---------KISLWNDHFVEYGRTVCMFRTEKIRKLVAMGIPESLRG 526

  Fly    85 KAWFYLSGAYLLKKKNPNVYNELLEKP-GNPTTI-EEIKKDKHRQFPFHEMFLDEQKVGQIELFN 147
            :.|...|.|......:|..|..|:|:. |....: |||::|.||..|.|..|.:|  .|...|..
Mouse   527 RLWLLFSDAVTDLASHPGYYGNLVEQSLGRCCLVTEEIERDLHRSLPEHPAFQNE--TGIAALRR 589

  Fly   148 VLKAYSIYNPKVGFCQAQAPIAAFLLMHLPAEDAFWVFVSVCDVYLQDYFIPGLEVIQNDAGILE 212
            ||.||:..|||:|:||:...:.:.||::...|:|||:.|:||:..|.|||...:...|.|..:.|
Mouse   590 VLTAYAHRNPKIGYCQSMNILTSVLLLYAKEEEAFWLLVAVCERMLPDYFNHRVIGAQVDQSVFE 654

  Fly   213 GLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLPWETLLRVWDCFLAEGIRVIFKVALVII 277
            .|:|:..|.:..|:........:.:: |||......:|.|:.:.|.|||..:||:.||::.|.::
Mouse   655 ELIKEQLPELAEHMSDLSALASISLS-WFLTLFLSIMPLESAVHVVDCFFYDGIKAIFQLGLAVL 718

  Fly   278 GASLSRHKVRKTCTGLC------ETLAVLRSPEEHIVEEEF------------------------ 312
            .|:...         ||      :.|.||....:||..|:.                        
Mouse   719 EANAEE---------LCSSKDDGQALMVLSRFLDHIKNEDSPGPPIGSHHAFFSDDQEPYPVTDI 774

  Fly   313 --IINNMMRL-------------NLRVEDFQIEHTRQKAR 337
              :|.:...|             |..||  ||||.|.|.|
Mouse   775 ADLIRDSYELWTQAVPVSMQKFGNQSVE--QIEHLRCKHR 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 56/163 (34%)
Tbc1d8XP_017177250.1 PH-GRAM1_TBC1D8 171..269 CDD:270156
PH-GRAM2_TBC1D8 311..406 CDD:270160
TBC 519..725 CDD:214540 70/217 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5210
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R540
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

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