DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and Sgsm1

DIOPT Version :10

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:XP_006535185.1 Gene:Sgsm1 / 52850 MGIID:107320 Length:1148 Species:Mus musculus


Alignment Length:149 Identity:32/149 - (21%)
Similarity:59/149 - (39%) Gaps:26/149 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 ELFNVLKAYSIYNPKVGFCQAQAPIAAFLLMHLPAED-AFWVFVSVCDVYLQDY---------FI 198
            :|.|::.:|...:.::|:.|....:.|.||:.|..|. ||..|..:.....|::         |.
Mouse   960 KLRNIMCSYIWQHIEIGYVQGMCDLLAPLLVILDDEALAFSCFTELMKRMNQNFPHGGAMDTHFA 1024

  Fly   199 PGLEVIQ-NDAGILEGLLKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLPWETLLRVWDCFL 262
            ....:|| .|:.:.| |:.:...  |.|        ..:...|||....|.|.::.:..||:...
Mouse  1025 NMRSLIQILDSELFE-LMHQNGD--YTH--------FYFCYRWFLLDFKRELVYDDVFSVWETIW 1078

  Fly   263 A----EGIRVIFKVALVII 277
            |    .....:..:||.::
Mouse  1079 AAKHVSSAHYVLFIALALV 1097

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 TBC 74..278 CDD:214540 32/149 (21%)
Sgsm1XP_006535185.1 RUN_SGSM1 20..196 CDD:439065
PH_RUTBC 254..425 CDD:275431
TBC <936..1105 CDD:214540 32/149 (21%)
Blue background indicates that the domain is not in the aligned region.

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