DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and tbc1d16

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:XP_012814267.2 Gene:tbc1d16 / 448159 XenbaseID:XB-GENE-986691 Length:727 Species:Xenopus tropicalis


Alignment Length:321 Identity:68/321 - (21%)
Similarity:121/321 - (37%) Gaps:78/321 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 YGG-------FQRTDKPKEPLSKAQIIAREKKWLYM-----------------------IDNWSI 61
            :||       ||:....:|...|.|.:..:|..|:.                       :.:|..
 Frog   300 HGGLGKLSEVFQQWKYCRETQLKEQQVTEDKTCLHFSIQRPNLPSSESHPEEGMYRRLDVTSWLE 364

  Fly    62 YMS------KNYKKIRDRCRK-----GIPKSVRPKAWFYLSGAY----------LLKKKNPNVYN 105
            :::      :.||     .||     ||..|:|.:.|.:|.|.|          .|:......|:
 Frog   365 HLNEVGQVEEEYK-----LRKLIFFGGIDPSLRGEVWPFLLGYYPWEITSEDREALRVHRREEYS 424

  Fly   106 ELLEK--PGNPTTIEE--------IKKDKHRQFPFHEMFLDEQKVGQIELFNVLKAYSIYNPKVG 160
            ::.:|  ..:||..:|        :.||..|....::.|..|.......:..:|..|::|:|.||
 Frog   425 QIQKKRVSMSPTAQKEFWKNVQFTVDKDVVRTDRSNQFFRGEDNPNVESMRRILLNYAVYSPGVG 489

  Fly   161 FCQAQAPIAAFLLMH-LPAEDAFWVFVSVCD--VYLQDYFIPGLEVIQNDAGILEGLLKKTCPPV 222
            :.|..:.:.|.:|.. |...|.||.||.:..  :::..   |..|.::.....|..||:...|..
 Frog   490 YSQGMSDLVAPILAEVLDESDTFWCFVGLMQNTIFISS---PRDEYMEKQLLYLRELLRLVHPRF 551

  Fly   223 YRHLQKHKVEPL--LYMTDWFLCAMTRTLPWETLLRVWDC----FLAEGIRVIFKVALVII 277
            |:||.....:.|  |:...|.|....|..|....||:|:.    :..:...:...||::::
 Frog   552 YQHLYSLGEDGLQMLFCHRWILLCFKREFPDSEALRMWEACWAHYQTDYFHLFLCVAIIVL 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 43/179 (24%)
tbc1d16XP_012814267.2 TBC 385..613 CDD:214540 54/231 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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