DRSC/TRiP Functional Genomics Resources

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Protein Alignment wkd and grtp1a

DIOPT Version :9

Sequence 1:NP_650089.1 Gene:wkd / 41390 FlyBaseID:FBgn0037917 Length:363 Species:Drosophila melanogaster
Sequence 2:NP_998567.1 Gene:grtp1a / 406711 ZFINID:ZDB-GENE-040426-2733 Length:356 Species:Danio rerio


Alignment Length:265 Identity:88/265 - (33%)
Similarity:133/265 - (50%) Gaps:16/265 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GFQRTD----KPKEPLSK---AQIIAREKKWLYMIDNWSIYMSKNYKKIRDRCRKGIPKSVRPKA 86
            ||||:|    :..|.|..   |.:..|..:|..::.. ...:.:|. |::...|||:|...||..
Zfish    34 GFQRSDDFDYETHEQLMSEYLAVLTRRSIRWAKLLQG-RRRVDRNL-KVKRYVRKGVPNEHRPLV 96

  Fly    87 WFYLSGAYLLKKKNPNVYNELLEKPGNPTTIEEIKKDKHRQFPFHEMF-LDEQKVGQIELFNVLK 150
            |...|||.....:||..|..||:....|...|.|:.|.||.||.:..| ...:...|..|:|||.
Zfish    97 WMVCSGAQEQMDRNPGYYQSLLDTHHEPKLEESIRTDLHRTFPDNIYFRKSAEPCLQQALYNVLV 161

  Fly   151 AYSIYNPKVGFCQAQAPIAAFL-LMHLPAEDAFWVFVSVCDVYLQDYFIPGLEVIQNDAGILEGL 214
            ||..:|..||:||....||.:| |:....|.:||:..::....|.||:.|.:..::.|..:|..|
Zfish   162 AYGHHNKAVGYCQGMNFIAGYLILVSKDEETSFWLMEALLSRILPDYYTPAMLGLKTDQEVLGEL 226

  Fly   215 LKKTCPPVYRHLQKHKVEPLLYMTDWFLCAMTRTLPWETLLRVWDCFLAEGIRVIFKVALVIIGA 279
            ::...|.|::.:|...|...|.::.||:|.....||.||:||:|||...||.:::|:|||.:|  
Zfish   227 VRLKAPAVWKLMQDQGVMWTLVVSRWFICLFIDVLPVETVLRIWDCLFYEGSKILFRVALTLI-- 289

  Fly   280 SLSRH 284
               ||
Zfish   290 ---RH 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wkdNP_650089.1 RabGAP-TBC 114..277 CDD:366170 58/164 (35%)
grtp1aNP_998567.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29
TBC 84..296 CDD:214540 76/213 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R540
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.940

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